fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G31800 (ATWRKY18, WRKY18)

Alias ATWRKY18, WRKY18
TF Classification
FioreDBWRKY (Click to show phylogenetic tree)
RARTF
AtTFDBWRKY
PlnTFDBWRKY (v3.0), WRKY (v1.0)
DATFWRKY
TAIR short description ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2)
TAIR annotation Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. (.1), Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. (.2)
Gene model
Gene model cDNA support
AT4G31800.1 49
AT4G31800.2 22
Entry clone (w/o stop) RE_0781_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 2237: response to abiotic or biotic stimulus ->response to molecule of bacterial origin
(P) 31347: response to stress ->regulation of defense response
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to abiotic or biotic stimulus ->defense response to bacterium
(F) 42802: protein binding ->identical protein binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 50691: response to stress ->regulation of defense response to virus by host
(P) 50832: response to abiotic or biotic stimulus ->defense response to fungus
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9751: other biological processes ->response to salicylic acid
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 3 4
rice
sorghum
physcomitrella
Total 2 6 8
Repression motif 
FLDISLDLNTNPFSAKL at 10/310 in AT4G31800.1
FLDISLDLNTNPFSAKL at 10/309 in AT4G31800.2
Repression motif
in putative orthologs		 
WVDTSLDLNINPLRVKS at 11/318 in poplar Pt030833 (Type III)
WVNTSLDLNINPFKHVN at 10/320 in poplar Pt008671 (Type III)
WINTSLDLNINPRRVHE at 11/311 in soybean Gm017186 (Type II)
WVNTSLDLNINPFKHVN at 10/320 in poplar Pt006824 (Type II)
WVNTSLDLNINPFKHVN at 10/318 in poplar Pt008672 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment