fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G32880 (ATHB8, ATHB-8)

Alias ATHB8, ATHB-8
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / HD-Zip III
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeobox gene 8 (.1)
TAIR annotation member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. (.1)
Gene model
Gene model cDNA support
AT4G32880.1 27
Entry clone (w/o stop) RE_0563_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10014: other biological processes ->meristem initiation
(P) 10067: developmental processes ->procambium histogenesis
(P) 10072: developmental processes ->primary shoot apical meristem specification
(P) 10089: other biological processes ->xylem development
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45597: other cellular processes ->positive regulation of cell differentiation
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 8284: other cellular processes ->positive regulation of cell proliferation
(F) 8289: other binding ->lipid binding
(P) 9733: other biological processes ->response to auxin
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR165a: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR165b: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR166a: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166b: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166c: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166d: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166e: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166f: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166g: 3'-CCCCTTACTTCGGACCAGGCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 7 9
soybean 3 13 16
rice 1 4 5
sorghum 1 4 5
physcomitrella 2 3 5
Total 1 8 31 40
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GAHARQLDLHLTLRVS at 851/940 in sorghum Sb031905 (Type III)
VLSSYRLHLALDLTRP at 746/880 in physcomitrella Pp026644 (Type III)
QSYHYHLGLELLNQSD at 709/980 in sorghum Sb022478 (Type III)
AVNSDELNLALAHYAT at 102/1010 in physcomitrella Pp014242 (Type III)
VLRSYRLHLGLDLTRS at 876/1010 in physcomitrella Pp014242 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         sterile or low fertility (A20791), 
         rough surface leaf (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         hyponastic leaf, 
         fragile stem 
         (A20269-62)
         

         
         

         anther indehiscent, 
         dark green leaf, 
         narrow leaf, 
         sterile or low fertility 
         (A20269-93)
         

         
         
         
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50098
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, not obtained  
            
            
          

         

         

          Comment