fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G37940 (AGL21)

Alias AGL21
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / AGAMOUS
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS-like 21 (.1)
TAIR annotation encodes a MADS box protein, highly expressed in the root. (.1)
Gene model
Gene model cDNA support
AT4G37940.1 4
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8134: protein binding ->transcription factor binding
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 2 3
rice 1 3 4
sorghum
physcomitrella
Total 3 7 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
STKAMKLGLQLH at 235/241 in soybean Gm037208 (Type III)
KTAAPELGLHLP at 235/241 in rice Os009710 (Type III)
PGKSMKLGLQLQ at 171/177 in poplar Pt021709 (Type III)
PGKSMKLGLQLQ at 171/177 in poplar Pt021708 (Type III)
STKAMKLGLQLH at 235/241 in soybean Gm037209 (Type II)
QSTAPKLGLQLNP at 233/240 in rice Os008453 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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