fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G05550
Alias
TF Classification
FioreDB
Trihelix
(Click to show phylogenetic tree)
RARTF
Trihelix
AtTFDB
PlnTFDB
Trihelix
(v3.0), Trihelix (v1.0)
DATF
Trihelix
TAIR short description
sequence-specific DNA binding transcription factors (.1.2)
TAIR annotation
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G11100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT5G05550.2
14
AT5G05550.1
12
Entry clone (w/o stop)
RE_03H05_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
rice
sorghum
1
1
physcomitrella
Total
1
1
2
Repression motif
Repression motif
in putative orthologs
GRARR
RLGLAL
PRSQP at 105/388 in sorghum
Sb025593
(Type Ib)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment