fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G09410 (CAMTA1, EICBP.B)

Alias CAMTA1, EICBP.B
TF Classification
FioreDBCAMTA (Click to show phylogenetic tree)
RARTF
AtTFDBCAMTA
PlnTFDBCAMTA (v3.0), CAMTA (v1.0)
DATFCAMTA
TAIR short description calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3)
TAIR annotation calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) (.1), calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) (.2), calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) (.3)
Gene model
Gene model cDNA support
AT5G09410.2 31
AT5G09410.1 31
AT5G09410.3 29
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1077: transcription factor activity ->transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(P) 50826: response to stress ->response to freezing
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9409: response to abiotic or biotic stimulus ->response to cold
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR159b: 3'-TTCTCGAGGGAAGTTAGGTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean 1 1 2
rice
sorghum
physcomitrella
Total 1 1 2
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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