| Alias |
FLF, AGL25, FLC |
| TF Classification |
| FioreDB | MADS (Click to show phylogenetic tree) |
| RARTF | MADS / FLOWERING LOCUS C |
| AtTFDB | MADS / TypeII |
| PlnTFDB | MADS (v3.0), MADS (v1.0) |
| DATF | MADS |
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| TAIR short description |
FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) |
| TAIR annotation |
MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. (.1), MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. (.2), K-box region and MADS-box transcription factor family protein ; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1); Has 6794 Blast hits to 6790 proteins in 825 species: Archae - 0; Bacteria - 0; Metazoa - 626; Fungi - 298; Plants - 5796; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). (.3) |
| Gene model |
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| Entry clone (w/o stop) |
RE_02F07 |
| External link |
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| Gene Ontology (GO) |
| (P) 10048: response to stress |
->vernalization response |
| (P) 30154: other cellular processes |
->cell differentiation |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (P) 42752: other biological processes |
->regulation of circadian rhythm |
| (C) 43234: other cellular components |
->protein complex |
| (P) 45944: other cellular processes |
->positive regulation of transcription from RNA polymerase II promoter |
| (F) 46983: protein binding |
->protein dimerization activity |
| (F) 5515: protein binding |
->protein binding |
| (C) 5634: nucleus |
->nucleus |
| (P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
| (P) 9266: response to abiotic or biotic stimulus |
->response to temperature stimulus |
| (F) 977: DNA or RNA binding |
->RNA polymerase II regulatory region sequence-specific DNA binding |
| (P) 9908: developmental processes |
->flower development |
| (P) 9910: developmental processes |
->negative regulation of flower development |
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| miRNA/tasiRNA |
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| Orthologs |
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Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
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| soybean |
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| rice |
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| sorghum |
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| physcomitrella |
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| Total |
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0E0 |
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| Repression motif |
RAKKTELMLKLVENLK at 136/196 in AT5G10140.1
RAKKTELMLKLVENLK at 136/167 in AT5G10140.2
RAKKTELMLKLVENLK at 136/186 in AT5G10140.3
RAKKTELMLKLVENLK at 136/182 in AT5G10140.4
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Repression motif
in putative orthologs |
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| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> done |
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| CRES-T phenotype from individual project
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| CRES-T phenotype from publication |
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| CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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| Comment |
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