fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G20240 (PI, PISTILLATA)

Alias PI, PISTILLATA
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / PISTILLATA
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description PISTILLATA, K-box region and MADS-box transcription factor family protein (.1)
TAIR annotation Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities. (.1)
Gene model
Gene model cDNA support
AT5G20240.1 76
Entry clone (w/o stop) RE_1296
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10093: developmental processes ->specification of floral organ identity
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 4 5
rice 1 1 2
sorghum 1 1 2
physcomitrella
Total 4 7 11
Repression motif 
KKENDSLQLELRHLKG at 99/208 in AT5G20240.1
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project abnormal petal, short stamen, sterile or low fertility (A20303-27)

hyponastic leaf (A20305-113)

abnormal petal, abnormal stamen, short stamen, sterile or low fertility (A20304-95)

hyponastic leaf (A20711-79)
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID50142 Torenia fournieri 35S:TfOrtholog-SRDX 2011-06-09    
[Publication link]
ID50143 Torenia fournieri 35S:TfOrtholog 2011-06-09    
[Publication link]
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