Alias |
|
TF Classification |
|
TAIR short description |
Duplicated homeodomain-like superfamily protein (.1) |
TAIR annotation |
Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 7371 Blast hits to 5463 proteins in 307 species: Archae - 4; Bacteria - 202; Metazoa - 744; Fungi - 303; Plants - 759; Viruses - 16; Other Eukaryotes - 5343 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_1034_x |
External link |
|
Gene Ontology (GO) |
(F) 1158: DNA or RNA binding |
->enhancer sequence-specific DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 45893: other metabolic processes |
->positive regulation of transcription, DNA-templated |
(F) 5516: protein binding |
->calmodulin binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN145: 3'-TTTTCAATTCCTAGATTAAAA-5' |
|
|
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
1 |
|
|
1 |
soybean |
|
1 |
|
|
1 |
rice |
|
|
|
|
|
sorghum |
|
|
|
|
|
physcomitrella |
|
|
|
|
|
Total |
|
2 |
|
|
2 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|