fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G42520 (BPC6, BBR/BPC6, ATBPC6)

Alias BPC6, BBR/BPC6, ATBPC6
TF Classification
FioreDBBBR_BPC (Click to show phylogenetic tree)
RARTF
AtTFDBBBR/BPC
PlnTFDBBBR/BPC (v3.0), BBR/BPC (v1.0)
DATFBBR-BPC
TAIR short description ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3)
TAIR annotation basic pentacysteine 6 (BPC6); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G42520.1 61
AT5G42520.2 34
AT5G42520.3 30
Entry clone (w/o stop) IE_06D03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5730: other intracellular components ->nucleolus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9723: other biological processes ->response to ethylene
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 3 8
soybean 1 2 5 8
rice 1 1
sorghum 1 1
physcomitrella
Total 4 6 8 18
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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