fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G45260 (ATWRKY52, SLH1, RRS1)

Alias ATWRKY52, SLH1, RRS1
TF Classification
FioreDBWRKY (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBWRKY (v3.0), WRKY (v1.0)
DATF
TAIR short description SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
TAIR annotation Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2. (.1), Confers resistance to Ralstonia solanacearum. Similar to NBLS-TIR resistance genes,and also contains similarity to transcription factors. Interacts with pathogen effector protein AvrPop2. (.2)
Gene model
Gene model cDNA support
AT5G45260.1 18
AT5G45260.2 9
Entry clone (w/o stop) IE_05B11_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6952: response to stress ->defense response
(P) 8219: other cellular processes ->cell death
(P) 9816: response to abiotic or biotic stimulus ->defense response to bacterium, incompatible interaction
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN129: 3'-CCATTGTGTTGTTATTCAGTA-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
SAFKNMLNLRLLKIYC at 522/1288 in AT5G45260.1
SAFKNMLNLRLLKIYC at 522/1187 in AT5G45260.2
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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