fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G52170 (HDG7)

Alias HDG7
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ANTHOCYANINLESS2
AtTFDBHomeobox / HD-Zip IV
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeodomain GLABROUS 7 (.1)
TAIR annotation Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. (.1)
Gene model
Gene model cDNA support
AT5G52170.1 0
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 1 14 15
rice 1 2 3
sorghum 1 5 6
physcomitrella 1 3 4
Total 5 31 36
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GFGATGLSLGLQTNME at 50/1043 in sorghum Sb023592 (Type III)
PLGYMALCLRLCSVII at 1032/1043 in sorghum Sb023592 (Type III)
FASSPALSLALDNAGG at 28/804 in rice Os009241 (Type II)
FSSSPALSLGLDNAGG at 32/987 in sorghum Sb024877 (Type II)
GLGGPSLDLDLLPGSS at 189/722 in soybean Gm025110 (Type III)
GESRTHLRLSLPCGAH at 889/1026 in sorghum Sb030572 (Type III)
MFNSPGLSLALQQPNI at 55/820 in poplar Pt039764 (Type III)
MFNSPGLSLALQSDID at 57/820 in soybean Gm026113 (Type III)
MFNSPGLSLALQQPNI at 54/823 in poplar Pt018110 (Type II)
FTSSPALSLALADAVA at 18/806 in rice Os018491 (Type III)
MFNSPGLSLALQTSID at 71/835 in soybean Gm005897 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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