Alias |
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TF Classification |
FioreDB | C2H2ZnF (Click to show phylogenetic tree) |
RARTF | C2H2(Zn) / InterPro C2H2 |
AtTFDB | |
PlnTFDB | C2H2 (v3.0), C2H2 (v1.0) |
DATF | C2H2 |
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TAIR short description |
C2H2 type zinc finger transcription factor family (.1) |
TAIR annotation |
C2H2 type zinc finger transcription factor family; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G04390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
IE_05H02 |
External link |
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Gene Ontology (GO) |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(C) 5634: nucleus |
->nucleus |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
(F) 8270: other binding |
->zinc ion binding |
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miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
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miR838: 3'-ACACGTTCTTCATCTTCTTTT-5' |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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rice |
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sorghum |
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physcomitrella |
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Total |
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0E0 |
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Repression motif |
RRVLEFDLNELPPNEEEE at 478/493 in AT5G56200.1
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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