fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G59340 (WOX2)

Alias WOX2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / WOX
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WUSCHEL related homeobox 2 (.1)
TAIR annotation Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain. (.1)
Gene model
Gene model cDNA support
AT5G59340.1 7
Entry clone (w/o stop) IE_02F01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10654: other cellular processes ->apical cell fate commitment
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48825: developmental processes ->cotyledon development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 80167: response to abiotic or biotic stimulus ->response to karrikin
(P) 8284: other cellular processes ->positive regulation of cell proliferation
(P) 90451: other biological processes ->cotyledon boundary formation
(P) 9880: developmental processes ->embryonic pattern specification
(P) 9942: developmental processes ->longitudinal axis specification
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice
sorghum 1 1
physcomitrella
Total 3 3
Repression motif 
SSGRKTLPLFPLQPLN at 196/260 in AT5G59340.1
Repression motif
in putative orthologs		 
SSDQATLPLFPLHPTG at 184/246 in poplar Pt021975 (Type Ib)
FSHQETLDLFPLHPTG at 196/216 in soybean Gm030897 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment