fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G60690 (IFL1, REV)

Alias IFL1, REV
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / HD-Zip III
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1)
TAIR annotation REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA. (.1)
Gene model
Gene model cDNA support
AT5G60690.1 30
Entry clone (w/o stop) IE_07G08
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10014: other biological processes ->meristem initiation
(P) 10051: developmental processes ->xylem and phloem pattern formation
(P) 10089: other biological processes ->xylem development
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
(P) 9855: developmental processes ->determination of bilateral symmetry
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
(P) 9956: developmental processes ->radial pattern formation
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR165a: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR165b: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR166a: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166b: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166c: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166d: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166e: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166f: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166g: 3'-CCCCTTACTTCGGACCAGGCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 6 9
soybean 1 1 13 15
rice 1 2 3 6
sorghum 1 1 3 5
physcomitrella 1 4 5
Total 4 7 29 40
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VLSSYRLHLALDLTRP at 746/880 in physcomitrella Pp026644 (Type III)
AVNSDELNLALAHYAT at 102/1010 in physcomitrella Pp014242 (Type III)
VLRSYRLHLGLDLTRS at 876/1010 in physcomitrella Pp014242 (Type III)
QSYHYHLGLELLNQSD at 709/980 in sorghum Sb022478 (Type Ia)
GAHARQLDLHLTLRVS at 851/940 in sorghum Sb031905 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         narrow leaf (direct input), 
         dark green leaf (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         abnormal petal, 
         abnormal stamen, 
         abnormal flower, 
         sterile or low fertility 
         (A20832-9)
         

         
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50107
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 4 lines 
           no phenotype 
            
          

         

         

          Comment