fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G65080 (AGL68, MAF5.2, MAF5)

Alias AGL68, MAF5.2, MAF5
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / FLOWERING LOCUS C
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description MADS AFFECTING FLOWERING 5, AGAMOUS-like 68, K-box region and MADS-box transcription factor family protein (.1.2)
TAIR annotation Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported. (.1), Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported. (.2)
Gene model
Gene model cDNA support
AT5G65080.1 10
AT5G65080.2 2
Entry clone (w/o stop) RE_1320
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10048: response to stress ->vernalization response
(P) 2000028: developmental processes ->regulation of photoperiodism, flowering
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48587: response to abiotic or biotic stimulus ->regulation of short-day photoperiodism, flowering
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9908: developmental processes ->flower development
(P) 9910: developmental processes ->negative regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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