fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G01250 Integrase-type DNA-binding superfamily protein (.1)

>AT1G01250.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstEII, BstNI, Bsu36I, BtsI, DraIII, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PflMI, PleI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 1540
AccI GT|[AC][TG]AC 1543, 3220, 4556, 5277
AccII(FnuDII) CG|CG 1466, 3608, 4722
AciI C|CGC 1465, 4075, 4081
AclI AA|CGTT 1184
AflII C|TTAAG 810, 2649, 2715
AflIII A|CPuPyGT 1478, 1989, 3216, 4355, 4632, 5980, 6273
AgeI A|CCGGT 699
AhdI GACNNN|NNGTC 703, 3438
AluI AG|CT 352, 1160, 1252, 2006, 2256, 2289, 2731, 3161, 3280, 3453, 3674, 4039, 4125, 4304, 4309, 4477, 4486, 4929, 4987, 5433, 5472, 5519, 5589, 6070, 6191
ApoI Pu|AATTPy 88, 136, 235, 522, 632, 660, 718, 1613, 1751, 1921, 2128, 2555, 2682, 2702, 3174, 3692, 3920, 4315, 4901, 5697, 6227
AseI AT|TAAT 513, 2539, 2988, 3551, 4728, 5158
AvaI C|PyCGPuG 418, 579, 5470
AvaII G|G[AT]CC 1463, 1511, 2895, 2943, 5057, 5097
BalI TGG|CCA 222
BanI G|GPyPuCC 4246
BanII GPuGCPy|C 4205
BclI T|GATCA 6083
BfaI C|TAG 1641, 1705, 2004, 2733, 2878, 3263, 4706, 5037, 5049, 5272
BglII A|GATCT 533, 553
BlpI GC|TNAGC 4308
BsaAI PyAC|GTPu 1046, 1057, 1477, 1990, 3827, 4354, 4546, 4631, 4788, 5910, 5979
BsaBI GATNN|NNATC 15, 2630, 5150, 5557
BsaHI GPu|CGPyC 1540
BsaJI C|CNNGG 219, 346, 3703, 4156, 4208, 5649
BsaWI [AT]|CCGG[AT] 699, 3870, 4243
BsiEI CGPuPy|CG 4346
BsiHKAI G[AT]GC[AT]|C 273
BsiWI C|GTACG 2669
BslI CCNNNNN|NNGG 1875, 3491
BsmI GAATGCN| 1894, 5315, 5775
BsoBI C|PyCGPuG 418, 579, 5470
Bsp1286I G[GAT]GC[CAT]|C 273, 4205, 5579
BspDI AT|CGAT 5143
BspHI T|CATGA 2831
BspT107I(HgiCI) G|G[TC][AG]CC 4246
BsrFI Pu|CCGGPy 699, 1869
BsrI ACTGGN| 545, 1599
BssKI |CCNGG 390, 713, 1853, 2409, 4208
BstAPI GCANNNN|NTGC 685
BstBI TT|CGAA 5640
BstF5I GGATGNN| 3967
BstUI CG|CG 1466, 3608, 4722
BstXI CCANNNNN|NTGG 115
BstYI Pu|GATCPy 533, 553, 864, 1118, 4235, 4336
BstZ17I GTA|TAC 3220, 5277
BtgI C|CPuPyGG 219, 346, 3703, 4156
BtrI CAC|GTC 5705
Cac8I GCN|NGC 1154, 3051, 5595, 5687
Cfr10I [AG]|CCGG[TC] 699, 1869
ClaI AT|CGAT 5143
DdeI C|TNAG 155, 450, 693, 1525, 1741, 3278, 4193, 4262, 4307, 4484, 4877, 4935, 5509
DpnI GA-CH3|TC 532, 552, 863, 1117, 1965, 3042, 3605, 4196, 4234, 4335, 4409, 6082
DpnII |GATC 532, 552, 863, 1117, 1965, 3042, 3605, 4196, 4234, 4335, 4409, 6082
DraI TTT|AAA 92, 656, 930, 1483, 1918, 2369, 2926, 3892, 5131, 5305, 6210
DrdI GACNNNN|NNGTC 1510, 6320
EaeI Py|GGCCPu 222, 4386
EcoO109I PuG|GNCCPy 1512
EcoRI G|AATTC 235, 1613, 1751, 2128, 6227
EcoRV GAT|ATC 1656, 4370
Fnu4HI GC|NGC 4103, 4258, 4279, 4381, 4393, 4479, 5591
HaeIII GG|CC 221, 1582, 1628, 1809, 4265, 4385
HhaI GCG|C 1150, 3609
HinP1I G|CGC 1150, 3609
HincII GTPy|PuAC 976, 1543, 1825, 2144, 4556
HindIII A|AGCTT 3162
HinfI G|ANTC 15, 64, 159, 252, 420, 588, 1472, 1739, 3670, 4957, 5199, 5211, 5642, 5659, 6059, 6100
HpaI GTT|AAC 1825
HpaII C|CGG 389, 698, 712, 1853, 1868, 2409, 3869, 4208, 4242, 4248, 4515, 4531
Hpy188I TCN|GA 52, 67, 255, 339, 570, 827, 1713, 1889, 2011, 2449, 3135, 3349, 3923, 4192, 4199, 4221, 4232, 4999, 5095, 5656
Hpy99I CG[AT]CG| 257, 434, 1538, 4272, 4449, 4557, 5706
HpyCH4III ACN|GT 1995, 2363, 2666, 3131, 3272, 3934, 3988, 4347, 4812, 4963, 5365, 5370, 5635, 5867
HpyCH4IV A|CGT 1045, 1056, 1091, 1183, 1476, 1503, 1539, 1650, 1989, 2140, 2325, 2585, 2676, 3214, 3437, 3826, 3899, 4273, 4353, 4432, 4545, 4630, 4636, 4787, 5704, 5909, 5978
HpyCH4V TG|CA 525, 677, 786, 1099, 1155, 1165, 2023, 2822, 2947, 3052, 3056, 3210, 3600, 4673, 4679, 4823, 4862, 5079, 5315, 5592, 6214
MboI |GATC 532, 552, 863, 1117, 1965, 3042, 3605, 4196, 4234, 4335, 4409, 6082
MfeI C|AATTG 226, 369, 1231
MscI TGG|CCA 222
MseI T|TAA 91, 284, 358, 384, 512, 516, 655, 752, 809, 929, 1104, 1132, 1264, 1348, 1364, 1482, 1677, 1755, 1824, 1847, 1917, 2054, 2137, 2205, 2252, 2368, 2385, 2538, 2572, 2595, 2648, 2698, 2714, 2925, 2987, 2995, 3147, 3198, 3204, 3285, 3313, 3528, 3546, 3550, 3623, 3662, 3891, 3997, 4017, 4093, 4664, 4669, 4727, 4894, 4975, 4992, 5130, 5157, 5204, 5304, 5439, 5453, 5499, 5541, 5618, 5828, 5863, 5984, 6067, 6173, 6209, 6280, 6325
MslI CAPyNN|NNPuTG 114, 599, 1637, 3045, 4418, 4681, 6003
MspA1I C[AC]G|C[GT]G 3675, 4310, 4383
MspI C|CGG 389, 698, 712, 1853, 1868, 2409, 3869, 4208, 4242, 4248, 4515, 4531
MwoI GCNNNNN|NNGC 199, 685, 1041, 1159, 4264, 4390, 4485
N.BstNBI GAGTCNNNN|N 257, 425, 5216, 5664, 6064
NciI CC|[CG]GG 390, 713, 1853, 2409, 4208
NcoI C|CATGG 346, 3703
NdeI CA|TATG 1635, 3803, 4677
NlaIII CATG| 261, 345, 461, 593, 599, 2115, 2774, 2830, 3045, 3050, 3054, 3449, 3577, 3702, 4583, 4681, 5077, 5214, 5535, 5594, 5725, 5920, 6108, 6125, 6272
NlaIV GGN|NCC 202, 1463, 1511, 2565, 2896, 4246, 4519, 5098, 5738
NsiI ATGCA|T 1100, 3053, 4674, 4680, 6215
NspI PuCATG|Py 262, 3051, 4682, 5595, 5726, 6273
PacI TTAAT|TAA 516, 3550
PaeR7I C|TCGAG 418, 579, 5470
PciI A|CATGT 6273
PflFI GACN|NNGTC 1743
PmeI GTTT|AAAC 1484
PmlI CAC|GTG 1046, 1057, 1477, 1990, 4354, 4546, 5910
PpuMI PuG|G[AT]CCPy 1512
PshAI GACNN|NNGTC 2894
PsiI TTA|TAA 2070, 3092, 3120, 3974, 4947, 5488
PvuII CAG|CTG 3675, 4310
RsaI GT|AC 1925, 2668, 2765, 2854, 3166, 3260, 3266, 3274, 3446, 3642, 3828, 3897, 4151, 4357, 4634, 4769, 4938, 4951, 5367, 5465, 5512, 5668, 6036
SalI G|TCGAC 1543, 4556
Sau3AI |GATC 532, 552, 863, 1117, 1965, 3042, 3605, 4196, 4234, 4335, 4409, 6082
Sau96I G|GNCC 1463, 1511, 1582, 1628, 2895, 2943, 5057, 5097
ScaI AGT|ACT 3267, 4939, 5466, 5513
ScrFI CC|NGG 390, 713, 1853, 2409, 4208
SfcI C|TPuPyAG 3427, 3714, 4962
SmlI C|TPyPuAG 418, 579, 810, 2649, 2715, 3192, 4750, 5470, 5517
SnaBI TAC|GTA 3827, 4788
SpeI A|CTAGT 3264, 5273
SphI GCATG|C 3051, 5595
SspI AAT|ATT 757, 888, 5123, 6114, 6330
StuI AGG|CCT 4266
StyI C|C[AT][AT]GG 346, 3703, 5649
SwaI ATTT|AAAT 3893
Taqƒ¿I T|CGA 400, 417, 578, 1019, 1498, 1542, 2285, 3383, 3876, 4131, 4330, 4343, 4555, 4608, 5030, 5142, 5338, 5346, 5469, 5631, 5639, 5893, 6056, 6073, 6097, 6221
TfiI G|A[AT]TC 15, 64, 159, 588, 1472, 3670, 5642
TliI C|TCGAG 418, 579, 5470
TseI G|C[AT]GC 4258, 4279, 4381, 4393, 4479, 5591
Tsp45I |GT[CG]AC 1408, 1992, 2155, 2328, 2583, 3440, 3993, 4023, 5253, 5702
Tsp509I |AATT 87, 126, 135, 225, 234, 368, 477, 490, 497, 514, 521, 631, 650, 659, 674, 717, 732, 830, 922, 951, 985, 1106, 1134, 1230, 1235, 1275, 1375, 1391, 1612, 1716, 1750, 1920, 1971, 2056, 2127, 2389, 2501, 2518, 2540, 2554, 2681, 2701, 2806, 2920, 2985, 3000, 3065, 3101, 3122, 3173, 3401, 3530, 3548, 3587, 3613, 3664, 3691, 3813, 3860, 3919, 4314, 4666, 4732, 4900, 5027, 5044, 5061, 5159, 5381, 5397, 5441, 5696, 5816, 5824, 5901, 5926, 5938, 6065, 6149, 6170, 6180, 6226, 6257, 6293
TspRI NNCA[CG]TGNN| 3132, 3658, 3745, 3991, 4150
Tth111I GACN|NNGTC 1743
XhoI C|TCGAG 418, 579, 5470
XmnI GAANN|NNTTC 235, 1886, 6258


Click here to view TAIR data

>AT1G01250 genomic sequence (4022-4600,) length:6339
cagtaaagaa gatttgaatc aagtctcttc caccgagatt ttctcctcaa 
50
aatcagattt ttgagaatcc gacccaaaaa aaaacacaaa ttttaaatct 
100
cccaaacccc accaaaatgg acaaacaaat tacctaaatt ccccgaaaaa 
150
gaaccctaag aatccagaaa ataaaaaaag atgtatcagt ttcgctgtat 
200
cggctccctg ttttgtcgcc gtggccaatt gaatgaattc aaggaagaga 
250
gagagtccga cgcatgttct tcgtgctctt ttttattaaa agaccaaacc 
300
ccaacaaaca aaacaaaaaa caaaacaaaa agactttcat ctgaaccatg 
350
gttagctact taactacaca attgagttta gaaacttaaa ccgggtctgg 
400
ttcgatttag tctttgtctc gagtctttga tacacgacga ttgaaaaccc 
450
cttagattat gtcatggttt ttgtcaataa ttgattgaca taattttcaa 
500
ttatgggttt tgattaatta aaaatttgca acagatctat ctcaactggt 
550
gtagatctaa acaaatacta tctgacaact cgagattaga ttctcatgtt 
600
catggaaata actaaagggg aaaccaaacc caaatttaga agtttgcttt 
650
caatttttaa aatttttgtt tacataattg caaagtatgc caactaagac 
700
cggtggtcaa gcaccgggaa ttttgaccaa atcaattcac attcaagtta 
750
ggcttaaata ttcggttttt gttgtgtttt gttttgttgc aaagactaaa 
800
gagttgttcc ttaagtttca aatgctttca gaattataca aaataaaagg 
850
cttattttag tttagatcct tgattattat ttttggtaat attattgatg 
900
gtggttctac aacgggagta aataattttt ttaaaaacaa aacaaaaaaa 
950
caaattacta aataacttga taaatgttga caaaacaatt caactccttt 
1000
agaagaaagg aaacgccaag tcgatagaga ggagggcgtg aaaagcacgt 
1050
gaagttcacg tggatttagg agagatgacc agaatgagaa gaacgtgaga 
1100
tgcatttaat tttctttgga tctctttttc tttttaattt cattttcaaa 
1150
tgcgcctgca cagctctgca ctttctcttc tgtaacgttt tttttttctc 
1200
tttctctttt tgtttattct ctcgcaacca caattgaatt gtaatatatt 
1250
tatagctttc actctttaag tcataaaatt atcatcaaaa tataaactac 
1300
ggctctgcga aaatgaatat acaatgacta tattattttg gaaaaatctt 
1350
taacaaacga taaagttaaa acaaaaaatt agtatatata gtaattatgg 
1400
aaaatgaagt cacgagtggg tataatatat gtatggcggt gagaaacaca 
1450
cagcaaaaag tggggaccgc gtgattcacg tgtttaaact atcctttatt 
1500
cgagacgttt gggtcccatt cccatctaag tcaaacaacg acgtcgactt 
1550
acaatatctc caagtcgtca agaatataat atgggccgat attacaatac 
1600
tggttttcta tggaattctt gtaatgttgg gccacatatg tgctaggtca 
1650
aacgtgatat cagccttttt cccaaacctt aataatgccc cccatctatc 
1700
ccttatctag caatcagaat tagaatgggc tgttcaacgg actcagtctt 
1750
gaattcttaa atctcaatct tatcatatat ttcattggtt ttgttttacc 
1800
acaacaaatc ggcctattag tccagttaac tctattgtaa gagttgattt 
1850
aatcccggat aaagtagtgc cggttcttgg tgaacttatt ctgaatgcca 
1900
ctaaacctat cgctttgttt aaatttgtac taacaatata tcaagtattc 
1950
atttatcttc aataatgatc caaattggtt tgattttcac acgtgactgt 
2000
aaactctagc ttcagaaaca tacttgcaag ttgaagttgt aacaatagtt 
2050
tttccttaat tttgttacct tataaaaaaa agaaaatccc attttggcgt 
2100
ttatagttga tatattcatg ttacaatgaa ttccgtgttt aacgtcaaca 
2150
aaatcgtcac ctttttggta acaaccaaaa aaaacacaaa tcataagatg 
2200
actactttaa tctaccaaca actcacgaaa aggaaaaaag aaccgaccaa 
2250
aacttaaagc tcatcgtatg aacaaaaaaa caaatctcga agctcaataa 
2300
aaaaagaaat atatatatac atatatacgt cacacacata tacatatata 
2350
ttttcagtta cttactgttt taaaaacgaa caagtgttaa aattgtttac 
2400
acgaaagcac ccggagacaa aactgatagt aaagccgtgt atggtctcat 
2450
ctgatgtaag aagaaagtga gtttcgtaac tcctcttgct atctatttcc 
2500
ccaatttttt caataaaaaa attgattgcg atattagtat taattacttg 
2550
aagtaaattt caatggttcc ttgttaatat gtagtgacgt gatgggttaa 
2600
aatgtggaaa ccatagactt caggtgatat ttatcaactg cccttttgct 
2650
taagggatta caaatcaccg tacgaagacg tgaattttct tgtgatacct 
2700
taaatttttc tttccttaag aatgataact ttagctagtt gtcatttttt 
2750
tcttcttgta ataatcgtac tacatcatgg gaaaagttta tattcttttg 
2800
taatggtaat tatagtagca aaatgcaaaa tcatgaaaga catttttttt 
2850
gagtagtaca gatttatgag tggtatagac tagagtttag actatggtcc 
2900
cttcaaaaaa taatcaatgc taatttttaa aagcaaccta tgtggacctg 
2950
cattgcccaa gtatatcata tatataaaag aaaataaatt aataagttaa 
3000
taattaggaa aggaaaaggg tttctttgta gatatatttt cacgatcatg 
3050
gcatgcatgc acacaaaatt acacctaaca aagtgatttc attataataa 
3100
taaattattg taagcacact tataattttc cactgtcaga tacttatttt 
3150
aactttggct gaagcttgta ctcaaatttt ggagtaaaat acttgagtgt 
3200
taatcttaat atgcaacgtg tatacacaag ttcactacga tatgtcaaga 
3250
tgtgagtagg tgtactagta ctactgtact aagctattaa cattacatac 
3300
tacataatat atttttaata cccttttaga ctttagtttc ataatctttt 
3350
cagacataag atttatttag tctctttctt gccatcgaca cttattttta 
3400
ccaattcgtt gaaagaagtg ctaaaactat aggacacaac gtcaccagta 
3450
catgagctat tgaaagcatt tccccaccac cactcccgat tgctggggag 
3500
acaaagattt gacatatata ctttttggtt taatttgaca tataaagtta 
3550
attaatcatc ggcggtatca gtagccccca tgttcttcaa ttttgttttt 
3600
atgcaagatc gcgcaatttt tattttaata aatcatcttt ttggtactaa 
3650
aactatcact gatttaattt gattcagctg tttattgtaa gaaatttaca 
3700
acccatggac aaactacaga tataaaatag ggaaaatcct tcccactgat 
3750
ttctgtatat tatttttttg tataaagagt atatcattat tattagttac 
3800
ggcatatgaa atagaattac gcacactacg tactactatc catttggcag 
3850
tagatttgga aaattacatt ccggtaatcg aaagtctatg atttaaatgt 
3900
acgttggggg catttatgta aattcagata ataaacagta acgcttttgg 
3950
ttagaaaatg ggattggatg agattataaa tgtagataac agtgtgactt 
4000
aaccacataa caaactcttt aATGTCACCA CAGAGAATGA AGCTATCATC 
4050
ACCACCAGTT ACCAACAACG AACCAACCGC CACCGCTTCT GCCGTTAAAT 
4100
CTTGCGGCGG AGGAGGTAAA GAAACCAGCT CATCGACCAC GAGGCATCCA 
4150
GTGTACCACG GAGTTCGCAA ACGCCGATGG GGAAAATGGG TTTCTGAGAT 
4200
CAGAGAGCCC CGGAAAAAGT CTCGGATTTG GCTCGGATCT TTTCCGGTGC 
4250
CGGAGATGGC TGCTAAGGCC TACGACGTGG CAGCGTTTTG TCTAAAAGGT 
4300
AGAAAAGCTC AGCTGAATTT CCCTGAAGAA ATCGAGGATC TACCTCGACC 
4350
GTCCACGTGT ACTCCCAGAG ATATCCAAGT CGCAGCGGCC AAAGCAGCCA 
4400
ACGCCGTGAA GATCATCAAA ATGGGAGATG ATGACGTGGC AGGAATAGAC 
4450
GACGGAGATG ATTTCTGGGA AGGCATTGAG CTGCCTGAGC TTATGATGAG 
4500
TGGAGGTGGG TGGTCGCCGG AGCCTTTTGT TGCCGGAGAT GATGCCACGT 
4550
GGCTTGTCGA CGGAGACTTG TATCAGTATC AGTTCATGGC GTGTCTGTGA 
4600
gtgttgctgt cgattgtgtc gtattcgtta tacgtgtacg ttgtatcgtt 
4650
attgtgttgg ctcacttaat ttaatgcata tgcatgtata ttttcattta 
4700
tttgtttcta gtttattgtt ttacgcgatt aataattaga tacctgtttc 
4750
tcaagttagt tatcaggttt gtacgcatct acaaaaatac gtataagtgt 
4800
atgttcttat atacagtttt tgtttgcata agtattgcta cttattctaa 
4850
acctttttat ttgtgcaact ttactaacta agtgtcaaaa actctttaag 
4900
gaatttcttt atttattgaa aacattatgt agctactgag tactgattat 
4950
aagtacagac tctacagtaa tggtttttaa tcatttggag cttttaactt 
5000
ctgattatta tttatgtagg gaaagtataa ttcgatacct agcataattc 
5050
ctagtttggt ccaatttcta tcgttgttca tgcaatagta acttctcgga 
5100
cccatatcca tattcaatat gaaatattac tttaaaacta ctatcgatat 
5150
ttatcatatt aatttgtttt gttttttcat agaaaacaaa aaaaagaaag 
5200
actccttaaa tgagtcatgg ggttcgtgat agatgttctc ctgatatgtg 
5250
tttgtgacag atatactatt atactagtat acatcttttt tttttttttt 
5300
tttttttaaa tgtgaatgca atagtttttt tttggtgtgt cgatatatcg 
5350
acatttatac ttgtaactgt acggttggca ataatttctt cttccaataa 
5400
tttttgttcg cttttcagtt ttcccctgat agtgagctat ttaattccaa 
5450
gatgttaata atatcagtac tcgagcttca ttgatactta taaatgtcgc 
5500
ttaaagttac tcagtactca agctaaccat tagcgtcatg tattaaatat 
5550
gggataaata tcaggggaaa ggacgattgt gccctcttca agctgcatgc 
5600
ttcatttgac attttggact taacctaact cttcgacagt tcgaatcacc 
5650
aaggcttcgg agtcttttcg taccaagagg aaacgggcgg gcgagaaaat 
5700
ttgtcacgtc gtttatcacg acactacatg ctactttggt tcctatttag 
5750
tataatccag cattcttttt cttgaatgcc aaaaaacaca caacgcaaag 
5800
tcgcaaacaa gccacataat ttgataattt taactgacag gaatacatcc 
5850
gtagagcgat tttcttaacg gttgtttcct aaaacatttg aagttcgacc 
5900
taaattgacc acgtggaaac acatggaaat tgtgaactca attcattttc 
5950
cagaatatat atatgattgg tatgaatata cgtgtttaag aactgaacca 
6000
tatatatgtt tcgtccaaaa aagaagcatc cgtatatgta cctcttgtat 
6050
tatcagttcg agtcctaatt aagctcgaca cttgatcaaa tcctaaactc 
6100
gactctatac atgaatattt gtatttcatg tttttctcac agcatcatac 
6150
aattcggtat ttccgtcaaa caatttaagt caattatatg taagctcata 
6200
taaagatgtt ttaaatgcat tttcgagaat tcaataccac attataggtt 
6250
actgaagcaa ttcttttaga gaacatgtta gttaatcaat cttgaattgt 
6300
tttggggcta tttgaccagt tagtccttaa atattttga
6350