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| Locus | Common name | Short description |
| AT1G05230 | HDG2 | homeodomain GLABROUS 2 (.1.2.3.4) |
>AT1G05230.3 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrGI, BssHII, BssSI, BstEII, BstXI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, SwaI, TliI, Tth111I, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 796, 972 |
| AccII(FnuDII) | CG|CG | 900, 910, 982 |
| AciI | C|CGC | 561, 1378, 1527 |
| AflII | C|TTAAG | 703 |
| AflIII | A|CPuPyGT | 1105, 1535 |
| AluI | AG|CT | 285, 408, 481, 571, 673, 774, 895, 1051, 1219, 1396, 1499, 1561, 1844, 1861, 1897, 2067, 2107, 2131 |
| AlwNI | CAGNNN|CTG | 728, 1562, 2041 |
| ApoI | Pu|AATTPy | 106, 303, 325, 1698 |
| AvaII | G|G[AT]CC | 474, 847, 867 |
| BamHI | G|GATCC | 1652 |
| BanII | GPuGCPy|C | 775, 1052, 1994 |
| BclI | T|GATCA | 920 |
| BfaI | C|TAG | 641, 855, 870, 996, 1203, 1398, 1584, 1812 |
| BlpI | GC|TNAGC | 289, 2066 |
| BsaAI | PyAC|GTPu | 580, 1106, 1536 |
| BsaBI | GATNN|NNATC | 888, 962 |
| BsaJI | C|CNNGG | 653, 758, 1199, 1998 |
| BsaWI | [AT]|CCGG[AT] | 1552, 1777 |
| BsiEI | CGPuPy|CG | 552 |
| BsiHKAI | G[AT]GC[AT]|C | 775, 1052 |
| BslI | CCNNNNN|NNGG | 233, 468 |
| Bsp1286I | G[GAT]GC[CAT]|C | 775, 1052, 1994 |
| BspHI | T|CATGA | 779, 923 |
| BsrBI | GAG|CGG | 370, 1390, 1486 |
| BsrDI | GCAATGNN| | 768, 1005 |
| BsrFI | Pu|CCGGPy | 876 |
| BsrI | ACTGGN| | 1336 |
| BssKI | |CCNGG | 227, 1199, 1605, 1617, 1998 |
| BstAPI | GCANNNN|NTGC | 1758 |
| BstBI | TT|CGAA | 413 |
| BstF5I | GGATGNN| | 786, 958, 990, 1229, 1491, 1600 |
| BstNI | CC|[AT]GG | 227, 1605, 1617, 1998 |
| BstUI | CG|CG | 900, 910, 982 |
| BstYI | Pu|GATCPy | 171, 224, 1652 |
| BtgI | C|CPuPyGG | 653, 758 |
| BtrI | CAC|GTC | 635 |
| Cac8I | GCN|NGC | 21, 587, 1211, 1218, 1388, 2110 |
| Cfr10I | [AG]|CCGG[TC] | 876 |
| DdeI | C|TNAG | 288, 426, 1261, 1629, 1686, 2051, 2065 |
| DpnI | GA-CH3|TC | 153, 170, 223, 547, 695, 862, 888, 919, 1601, 1651, 1831, 1853, 1873, 1925 |
| DpnII | |GATC | 153, 170, 223, 547, 695, 862, 888, 919, 1601, 1651, 1831, 1853, 1873, 1925 |
| DrdI | GACNNNN|NNGTC | 739, 1548 |
| EcoO109I | PuG|GNCCPy | 848 |
| EcoRI | G|AATTC | 106, 1698 |
| EcoRV | GAT|ATC | 200, 431 |
| Fnu4HI | GC|NGC | 17, 24, 371, 570, 762, 1214, 1635, 1846 |
| HaeIII | GG|CC | 1611 |
| HhaI | GCG|C | 909 |
| HinP1I | G|CGC | 909 |
| HincII | GTPy|PuAC | 934, 972, 2047, 2095 |
| HindIII | A|AGCTT | 409, 674, 896, 1500, 2132 |
| HinfI | G|ANTC | 140, 359, 726, 926, 947, 962, 1235, 1672, 2039, 2049, 2125 |
| HpaI | GTT|AAC | 934 |
| HpaII | C|CGG | 875, 1199, 1551, 1776 |
| Hpy188I | TCN|GA | 116, 221, 487, 729, 865, 891, 1687, 1799, 2036 |
| Hpy99I | CG[AT]CG| | 503, 973 |
| HpyCH4III | ACN|GT | 112, 553, 1129, 1783, 2025, 2091, 2115 |
| HpyCH4IV | A|CGT | 343, 579, 634, 1105, 1123, 1535 |
| HpyCH4V | TG|CA | 445, 715, 763, 841, 1033, 1069, 1208, 1507, 1633, 1740, 1804, 1847, 2086, 2111 |
| MboI | |GATC | 153, 170, 223, 547, 695, 862, 888, 919, 1601, 1651, 1831, 1853, 1873, 1925 |
| MseI | T|TAA | 536, 702, 933, 1914 |
| MslI | CAPyNN|NNPuTG | 266, 784, 958 |
| MspI | C|CGG | 875, 1199, 1551, 1776 |
| MwoI | GCNNNNN|NNGC | 14, 570, 1350, 1527, 1758 |
| N.BstNBI | GAGTCNNNN|N | 1677 |
| NciI | CC|[CG]GG | 1199 |
| NcoI | C|CATGG | 653 |
| NlaIII | CATG| | 65, 374, 652, 778, 922, 929, 952, 1280, 1324, 1340, 1405 |
| NlaIV | GGN|NCC | 309, 332, 1652, 1993 |
| NruI | TCG|CGA | 901 |
| NspI | PuCATG|Py | 1281 |
| PflMI | CCANNNN|NTGG | 233 |
| PmlI | CAC|GTG | 1106, 1536 |
| PpuMI | PuG|G[AT]CCPy | 848 |
| PsiI | TTA|TAA | 1496 |
| PspGI | |CC[AT]GG | 227, 1605, 1617, 1998 |
| RsaI | GT|AC | 345, 1332, 1554 |
| SacI | GAGCT|C | 775, 1052 |
| SalI | G|TCGAC | 972 |
| Sau3AI | |GATC | 153, 170, 223, 547, 695, 862, 888, 919, 1601, 1651, 1831, 1853, 1873, 1925 |
| Sau96I | G|GNCC | 474, 847, 867 |
| ScaI | AGT|ACT | 1333 |
| ScrFI | CC|NGG | 227, 1199, 1605, 1617, 1998 |
| SfcI | C|TPuPyAG | 1859 |
| SmlI | C|TPyPuAG | 703 |
| SnaBI | TAC|GTA | 580 |
| SspI | AAT|ATT | 661 |
| StuI | AGG|CCT | 1612 |
| StyI | C|C[AT][AT]GG | 653 |
| Taqƒ¿I | T|CGA | 3, 108, 205, 412, 433, 501, 522, 532, 549, 747, 971, 1022, 1164, 1887 |
| TfiI | G|A[AT]TC | 140, 359, 726, 926, 947, 962, 1235, 2039, 2125 |
| TseI | G|C[AT]GC | 17, 570, 762, 1635, 1846 |
| Tsp45I | |GT[CG]AC | 1266 |
| Tsp509I | |AATT | 105, 297, 302, 324, 464, 1242, 1476, 1697 |
| TspRI | NNCA[CG]TGNN| | 715, 1852, 2116 |
| XbaI | T|CTAGA | 997 |
| XmnI | GAANN|NNTTC | 89, 314, 410 |
Click here to view TAIR data
>AT1G05230.3 length:2160
ATGTTCGAGC CAAATATGCT GCTTGCGGCT ATGAACAACG CAGACAGCAA | 50 |
TAACCACAAC TACAACCATG AAGACAACAA TAATGAAGGA TTTCTTCGGG | 100 |
ACGATGAATT CGACAGTCCG AATACTAAAT CGGGAAGTGA GAATCAAGAA | 150 |
GGAGGATCAG GAAACGACCA AGATCCTCTT CATCCTAACA AGAAGAAACG | 200 |
ATATCATCGA CACACCCAAC TTCAGATCCA GGAGATGGAA GCGTTCTTCA | 250 |
AAGAGTGTCC TCACCCAGAT GACAAGCAAA GGAAACAGCT AAGCCGTGAA | 300 |
TTGAATTTGG AACCTCTTCA GGTCAAATTC TGGTTCCAAA ACAAACGTAC | 350 |
CCAAATGAAG AATCATCACG AGCGGCATGA GAACTCACAT CTTCGGGCGG | 400 |
AGAACGAAAA GCTTCGAAAC GACAACCTAA GATATCGAGA GGCTCTTGCA | 450 |
AATGCTTCGT GTCCTAATTG TGGTGGTCCA ACAGCTATCG GAGAAATGTC | 500 |
ATTCGACGAA CACCAACTCC GTCTCGAAAA TGCTCGATTA AGGGAAGAGA | 550 |
TCGACCGTAT ATCCGCAATC GCAGCTAAAT ACGTAGGCAA GCCAGTCTCA | 600 |
AACTATCCAC TTATGTCTCC TCCTCCTCTT CCTCCACGTC CACTAGAACT | 650 |
CGCCATGGGA AATATTGGAG GAGAAGCTTA TGGAAACAAT CCAAACGATC | 700 |
TCCTTAAGTC CATCACTGCA CCAACAGAAT CTGACAAACC TGTCATCATC | 750 |
GACTTATCCG TGGCTGCAAT GGAAGAGCTC ATGAGGATGG TTCAAGTAGA | 800 |
CGAGCCTCTG TGGAAGAGTT TGGTTTTAGA CGAAGAAGAA TATGCAAGGA | 850 |
CCTTTCCTAG AGGGATCGGA CCTAGACCGG CTGGATATAG ATCAGAAGCT | 900 |
TCGCGAGAAA GCGCGGTTGT GATCATGAAT CATGTTAACA TCGTTGAGAT | 950 |
TCTCATGGAT GTGAATCAAT GGTCGACGAT TTTCGCGGGG ATGGTTTCTA | 1000 |
GAGCAATGAC ATTAGCGGTT TTATCGACAG GAGTTGCAGG AAACTATAAT | 1050 |
GGAGCTCTTC AAGTGATGAG TGCAGAGTTT CAAGTTCCAT CTCCATTAGT | 1100 |
CCCAACACGT GAAACCTATT TCGCACGTTA CTGTAAACAA CAAGGAGATG | 1150 |
GTTCGTGGGC GGTTGTCGAT ATTTCGTTGG ATAGTCTCCA ACCAAATCCC | 1200 |
CCGGCTAGAT GCAGGCGGCG AGCTTCAGGA TGTTTGATTC AAGAATTGCC | 1250 |
AAATGGATAT TCTAAGGTGA CTTGGGTGGA GCATGTGGAA GTTGATGACA | 1300 |
GAGGAGTTCA TAACTTATAC AAACACATGG TTAGTACTGG TCATGCCTTT | 1350 |
GGTGCTAAAC GCTGGGTAGC CATTCTTGAC CGCCAATGCG AGCGGTTAGC | 1400 |
TAGTGTCATG GCTACAAACA TTTCCTCTGG AGAAGTTGGC GTGATAACCA | 1450 |
ACCAAGAAGG GAGGAGGAGT ATGCTGAAAT TGGCAGAGCG GATGGTTATA | 1500 |
AGCTTTTGTG CAGGAGTGAG TGCTTCAACC GCTCACACGT GGACTACATT | 1550 |
GTCCGGTACA GGAGCTGAAG ATGTTAGAGT GATGACTAGG AAGAGTGTGG | 1600 |
ATGATCCAGG AAGGCCTCCT GGTATTGTTC TTAGTGCAGC CACTTCTTTT | 1650 |
TGGATCCCTG TTCCTCCAAA GCGAGTCTTT GACTTCCTCA GAGACGAGAA | 1700 |
TTCAAGAAAT GAGTGGGATA TTCTGTCTAA TGGAGGAGTT GTGCAAGAAA | 1750 |
TGGCACATAT TGCTAACGGG AGGGATACCG GAAACTGTGT TTCTCTTCTT | 1800 |
CGGAGTGCAA ACTCTAGCCA GAGCAATATG CTGATCCTAC AAGAGAGCTG | 1850 |
CACTGATCCT ACAGCTTCCT TTGTGATCTA TGCTCCAGTC GATATTGTAG | 1900 |
CTATGAACAT AGTGCTTAAT GGAGGTGATC CAGACTATGT GGCTCTGCTT | 1950 |
CCATCAGGTT TTGCTATTCT TCCTGATGGT AATGCCAATA GTGGAGCCCC | 2000 |
TGGAGGAGAT GGAGGGTCGC TCTTGACTGT TGCTTTTCAG ATTCTGGTTG | 2050 |
ACTCAGTTCC TACGGCTAAG CTGTCTCTTG GCTCTGTTGC AACTGTCAAC | 2100 |
AATCTAATAG CTTGCACTGT TGAGAGAATC AAAGCTTCAA TGTCTTGTGA | 2150 |
GACTGCTTGA | 2200 |
>AT1G05230.3 longest ORF length:719
MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE | 50 |
GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE | 100 |
LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA | 150 |
NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS | 200 |
NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII | 250 |
DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA | 300 |
SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN | 350 |
GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP | 400 |
PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF | 450 |
GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI | 500 |
SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF | 550 |
WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL | 600 |
RSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNIVLN GGDPDYVALL | 650 |
PSGFAILPDG NANSGAPGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN | 700 |
NLIACTVERI KASMSCETA | 750 |