fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G05230 (HDG2)

Alias HDG2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ANTHOCYANINLESS2
AtTFDBHomeobox / HD-Zip IV
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeodomain GLABROUS 2 (.1.2.3.4)
TAIR annotation Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. (.1), Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. (.2), Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. (.3), Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number. (.4)
Gene model
Gene model cDNA support
AT1G05230.2 30
AT1G05230.1 29
AT1G05230.3 26
AT1G05230.4 26
Entry clone (w/o stop) RE_0520_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10090: other cellular processes ->trichome morphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48497: other cellular processes ->maintenance of floral organ identity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 13 15
soybean 1 3 23 27
rice 1 4 5
sorghum 1 8 9
physcomitrella 2 2 4
Total 3 7 50 60
Repression motif
Repression motif
in putative orthologs
FFASPALSLSLAGIFR at 21/761 in poplar Pt029047 (Type III)
LFSSSSLSLSLAGIFR at 20/751 in soybean Gm017137 (Type III)
GFGATGLSLGLQTNME at 50/1043 in sorghum Sb023592 (Type III)
PLGYMALCLRLCSVII at 1032/1043 in sorghum Sb023592 (Type III)
MEEEKSLALELAASSM at 274/782 in soybean Gm000301 (Type III)
PALGPSLDLDLLSGGS at 181/707 in sorghum Sb011181 (Type III)
PAPAPSLNLDLLPAGT at 189/713 in soybean Gm013033 (Type III)
GIGGPSLDLDLIPTSS at 191/707 in poplar Pt027687 (Type III)
FSSSPALSLGLDNAGG at 32/987 in sorghum Sb024877 (Type III)
GLGGPSLDLDLLPGSS at 189/722 in soybean Gm025110 (Type III)
GIGGPSLDLDLIPTSS at 191/725 in poplar Pt027686 (Type III)
FTSSPALSLALADAVA at 18/806 in rice Os018491 (Type III)
FASSPALSLALDNAGG at 28/804 in rice Os009241 (Type III)
LGGPPSLDLDLLSGCS at 182/700 in sorghum Sb003177 (Type III)
GESRTHLRLSLPCGAH at 889/1026 in sorghum Sb030572 (Type III)
GLGGPSLDLDLLPGSS at 189/718 in soybean Gm045465 (Type III)
MFNSPGLSLALQTSID at 71/835 in soybean Gm005897 (Type III)
LFASPALSLSLAGIFR at 25/762 in soybean Gm038266 (Type III)
FFASPALSLSLAGIFR at 25/751 in soybean Gm040846 (Type III)
MEEEKSLTLELAASSM at 274/747 in soybean Gm025492 (Type III)
MFNSPGLSLALQQPNI at 55/820 in poplar Pt039764 (Type III)
GPAPSSLNLDLLPAAG at 192/721 in soybean Gm020365 (Type III)
MFNSPGLSLALQSDID at 57/820 in soybean Gm026113 (Type III)
FFASPALSLSLAGIFR at 21/759 in poplar Pt011816 (Type III)
GLGGPALDLDLDLDLI at 148/668 in poplar Pt023720 (Type III)
MFNSPGLSLALQQPNI at 54/823 in poplar Pt018110 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo

abnormal shaped silique (A20027), abnormal petal (A20027), asynmetric cotyledon (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

ID Species Construct Date Comment Phenotype Photo
ID50064 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, not obtained      
Comment