fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G05930 Domain of unknown function (DUF313) (.1)

>AT1G05930.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BamHI, BglII, KpnI, NcoI, NotI, PacI, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
EcoRI G|AATTC 1056, 2085, 4186
EcoRV GAT|ATC 270, 2511
HindIII A|AGCTT 3971, 5514, 5630
HpaI GTT|AAC 4967, 6355
NdeI CA|TATG 3184, 6116
NheI G|CTAGC 5703, 6295
PstI CTGCA|G 685, 820, 3007
PvuII CAG|CTG 346, 682
SacI GAGCT|C 2543
StyI C|C[AT][AT]GG 4399
XbaI T|CTAGA 5574
XhoI C|TCGAG 3977


Click here to view TAIR data

>AT1G05930 genomic sequence (4000-4871,5431-5515,) length:7015
aatagatgct tttttaaaca gaatgattca atgctaacga atgagactct 
50
tacccatgaa gtaatgtttt gatggtggtt gacttaacgt cattcaatta 
100
tttatccagG CTTACAATGG AGATGATTAC GCTGGAGCGA GAATTGTCAG 
150
TAGAGCCTAT GAGCTTCGAG ATGTAgtatg tttgcaagtc tctcagcctg 
200
catatatatt tttccattta aaattgctgc aagtctatca tcacccaaaa 
250
gctgttatct gaagccatag atatcattat gtctcagGTG CATGGGATGC 
300
TGTCACAGAT GGACCCAGCA CTGCTAACAT ATTGTGATAA GATCGCAGCT 
350
GAAGGTGGTC CTTCACTGAT ACCAGATGAT CTGAGTGGAT CAATCCTCGG 
400
TTTAGCTCCT GTTGTGCAGA TGGGAACTGT TACTAGAACC AGTGCCAGAC 
450
TTCGAAATGT GCAGCCAGAG GTTAATTTAG ATCGAGATTA TGAAGGTCTT 
500
AAAAAGCCCA AGAAAACTAC TGATGCTGTC AGTATAGgta atgccactgc 
550
aacctaagat ttggttcttg ttttacgtgt taagtgttgg tggtttgctt 
600
tgagtgctta cgatctaggg ttcctagatg tagaaaaaat ctttgataat 
650
gagacttatt tatacttgtg atgaacagAT TCAGCTGCAG ACAAATCACA 
700
GAACCAAGAT TCAGGCCAAG AAATGCCATC TCCGGATGCG GCCAACCCAC 
750
AGTCAGCAGC TCCTTCTCCA ACAGATGGTG ATAGAGAAGA CCAAAGCGAG 
800
CCACCAAGTA AAGAGGCATC TGCAGAAGAT ATGAGTGGTG ATTCTTGCAA 
850
GGGTCCTGCG GCCAAGTCGG ATAAAGAAAT TTCAAGCCGA ACAGAATCTG 
900
TAAAGGGAGT ATTCATGGAA CGTACTGACA ACTACAGCAT TCCGCAGATG 
950
GAGAGGCTTT ACACTCGAAT CATGAAGGGT GTTCTTGAGA CTCTGGACAA 
1000
AGGGCTTCGT GATGATGATA ATAATCCTAA GCATTCAATT TTGAGATTTT 
1050
TGTCGGAATT CGCACAGCAT CAGGCGAATT TCTGAatcta aattttctca 
1100
tatcggtcac taggataggt ttgctaggag aaagaatgaa aggaacaaaa 
1150
gatttttttt ggttttttaa aatccggatt cttcttttga ctgaaaaagt 
1200
tgcaagaaca aaaggtaata gtttatcggt aggattctct tgtaaatttg 
1250
aacttgcatc tttcaatctt aaacaaaaag ccataaacaa aaccaaaaag 
1300
atttctctta tcttgaaacg gtgtttagtc aaaaaaaaaa aaaaggaaca 
1350
aagaagaaaa taatatttgg ctagattctt tggctctcac tcgggtttct 
1400
gttatgaccg ttaatgaatt tgagcgggaa gatcatgccg acgcattgag 
1450
actttttgtc aacgctataa aaacaaaccc aatctcacca ttttcttgaa 
1500
agctctctct gtctctctcc tcgtttattt agactttgca attcttgtgc 
1550
tcctcttctc tacgttttga acaactcctt tggctttcgc gattcataca 
1600
acttctcacc gatatagaag aagagATGAG TTCGCGTGAT AAACCCAAGA 
1650
CTTTCGCAGA AGTAAGAGAA GAGATATGTA AGAGAAGAGA AGAGATGATT 
1700
TCGCGTGATA ACCAAAAAAA AACCAAGACT GTCGCACAAG TAAGAGAAGA 
1750
GAAAGGTAAG AGAAGGGAAG AGATGATTTC GCGTTATAAC CAAAAAAAGG 
1800
CCAAGACTGT CGCACAAGTA AAAGAAGGGA AAGGTAAGAG AAGAGAAGAG 
1850
ATGATTTCGC GTGATAACCG AACAAAACCC AAGACTGTCG CACAAGTAAG 
1900
AGATGCGAAA AGGAAGAGAA CCTTCGATCA CGTCCCCAGA GGAACAAGGG 
1950
AACCTCACGC ATACCTTCGC AATGATCCAG CGCCTCAAGT TGCTTCTGTC 
2000
CCCAAGAGTG TCCCAGAAGA GAAAGATGTG ATATTGGATA GAATCTTGAG 
2050
TAACGTCCCC AGAAGAAAAA AGACTACTTC TTACGAATTC GTCCCACCAA 
2100
AACACCCACA AGAACCGCAA TGGCTTCTCC AGGTTATGAG TCGCATGAAC 
2150
GGCGCTGGTG ATCCGAAGCT AATCATAGAG AAGAATCTGG ACTCGAACGA 
2200
TGTTGATCCA CGTCAAAACC GACTCTCAAT CCCTATCAAT ACCGTAATCC 
2250
AAAACGATTT CTTGACGCTT GACGAGTCAA GGTTGATTGA TGAAGACGAA 
2300
ATCACTAACG AAGGGAATAT GGGTGTTGCA GCGTTTCTTG TTGATCAGCG 
2350
AACTAAGAAG TGGAACATGG GTTTTAAACA ATGGTTTATG ACGACTGATT 
2400
CAGGGAGCAG TTACTGGAGT TTTGTGTTGC GAGGTGAATG GAGCAACGTC 
2450
GTTGAGACTA ATGGACTGAA AGAAGGCGAC AAAATCAGCC TTTGGTCTTT 
2500
CAGGTCCAAC GATATCCTCT GTTTTGCCCT TGTTCCTCCA ACGAGCTCTG 
2550
TTGTTGAGTC TTTAGATAAG TGAaaagaag ggttttttgg gagtattagg 
2600
gttttattgt gataaagatg ttgctagggt tttggtacag aaattggatc 
2650
ttaatcttgt tggggtttct cttccattag tatacttttg acatgactct 
2700
ggttttgttg cttgatgtac aagcacacat atcaagttca attgctagtg 
2750
acttttaggc ctactttagt tactgcattg gtaatatctg tgatttacta 
2800
tgatacaaaa agtttataac tgtgggacga aattggtcca atatggtatt 
2850
tggcacattc ctccaaaatg ctcatacaga aactgttagg gatcagagat 
2900
tgtactcatg ttaaagcaga atccagaagg ttcttgagtt cttcgtcgaa 
2950
ctcaatcatc agattcgaag gcattgaggt caatttgagt tcctctgatg 
3000
atggcactgc agaactaaga cccttgttgt gatttttgag tgacaaactg 
3050
aagactatat tctcttccgc atccaatata atgtagttct tcaaatacat 
3100
ttgactccaa tacatttgac gtatcaaacg cttatcttga cttcaatgca 
3150
ttagctatct gactgaaaac caaatttatc ctccatatga aaacatcaac 
3200
acaacatttt cacaatcttc gccatagccg aggaggatca aacacctctg 
3250
agttgaatag attcaatctt aaaatgtgtt gaaccagtaa gtatttgtcc 
3300
aaccatcttc agatgttgag agagcatggc taaacagtct tggaaggccc 
3350
aaagtcaata gttatgaatc atgatttttc tcgacatatt cattgacaaa 
3400
agtatagagc acaagaccat tgaggaggac cttgacataa ctacaagaag 
3450
atcacaacat tgataacttt tatgcaaaga caCTAACAAA ATCGAAGCGA 
3500
TAAATTCTCT CTTTTTGCAA ATTTCATTCT CTCATACACT GAGTCCTTTA 
3550
ATGGGCCTAA ATTCAATGAA CTGATTGGGT CTACTCCCAT TTGAGCCCAA 
3600
ATATCAATTA CAGCAATCGC TTGACCCATG AATCCAAAGT CCATtcatta 
3650
ggcaaattca ctgcactgat tcctgatttt cgcttaaaat tatataaagg 
3700
taaaaactat caagattata aaaaaaataa aaaatggacg attatacatt 
3750
tttgccatcg ctcatagatt tccattcaat gcataataca cacaatctcc 
3800
aaatacaatg atgtaaaaag aaggcaagtg ggtcataatt aatgattaat 
3850
cacagtaatt aacctatttg ctgaaaggta aaaaaggaat gttaccattc 
3900
cagaactgat tttaactatt taataacact cattctcatt ctctttctct 
3950
ctcaaaagtc cttcttcctc aagcttctcg agtaagggtt cagatcacaA 
4000
TGACGACAAA CGACGATGAT CACGCGGCTG AGAGAAACAC GATGTCCATG 
4050
AACTATGAAT TGGCGGCTAC GTTGAGTGAT GAAGAACAAC GCGCAAGAAA 
4100
AGGAAAAGCC AAGATTGTCT GTAAAGAAGA AGACCACGTC TTTATCAAAA 
4150
AGAAAGAAAA ATACGAGGAA GAGAGCGAGA AGAGGGAATT CTTCAGTCAT 
4200
GTCCCCAGAA AGATAAGGCC TGCGCTTAGA TACCCACAAC CTAACTTTGA 
4250
AAACCCTAAT GGGGCTTCTT CTTCTTTAAA CTTACCCTTC GAAGAAGACT 
4300
ACTACATGGC TGAGTACTAC AAGAAGACGG AGACCATAAA CCCACCTAAC 
4350
CCTTATCACC AATGGTCTCC TTCTTCGTTC TTAACGGAGT ACACACACCC 
4400
TAGGATGCTT GAGGTGTTAC ATCGCTGTGG ATTCAACAGA CCAGTGGTAA 
4450
CTTGTTATTC AAGGACGGCC AGGGAGATGC GGTGGTGGCT TCGCCAGGTG 
4500
ATGAAAGACA TGAGAGCAGA AGACCTAACA CTTATCTTAG AGAAGACTCT 
4550
GTCCACAACT GATGTGATCA CAACGACACA TGGCCGTTTC TCAATGCATT 
4600
TCAACAGATT AATCAGTAAC GACTTCTTGA AGCCTGAGGA GCGGAGTATC 
4650
CTAGAAGAAG ATACCTACAA TGATGAGACG ATGGGAGTTG GAGCCATTCT 
4700
CGTGGATCAA AGGTCTCAAA AGTGGAGTGT GATTTTGAAG AGATGGGGCC 
4750
AGAATTACTT TCTGAGTTGT GGCTGGAACG ACGTTGTTAA GGCTAATAAA 
4800
TTGAAAGCTG GCGACGACAT CTGTCTTTGG GCGTTTAGGT GCGATGGAGT 
4850
CCTCTGTTTT GCCATGAGGC Agtatagctc ctattttcgt cattgacaag 
4900
tttcttgtgt ctgttgagat tcacattggt ctaatctttc aggccattct 
4950
tgaggttttt ggtctagtta acaaaattag ggtttttatt ttttactagg 
5000
atttctttca tctctctttt aacactttgt cgggtttttg agtttctagg 
5050
attgtttaaa atgcaggagg cttagcacag tctctgtttc atgcttaata 
5100
caatacactc tctaaataat gctttcaaga aaagaaaaag aaaagattat 
5150
acctttagag ttattataag aggaaaacga agtaaatcag aacggattaa 
5200
cgaactatat aaaacaacaa agtcactctt ttcagttttc attcacaaca 
5250
aaatcttaat ggggcttcca cttcttcttc atcgcctttt tctttaacct 
5300
tcttcaaaac tacattgccg agtccaagaa gactccatct ttgtgtctaa 
5350
cgggagacca cgagccccaa gaggcgtgtg gtgtcaccga gaggggtaaa 
5400
tcagaaagac atcagtcttt ggtctttcag GTGGCGTGGA ATCCTCTGTT 
5450
TTGCTCTTGT TCCTCCTCTT ACATTGAGAC AGAGTAGCTC TTCCAATGCT 
5500
CGCCGTCTCT GCTAAgcttc ttgtctctgt ggagattgat cttcatttgt 
5550
acagccggct aagttggggc aattctagag ggttttggtc ttactacaat 
5600
gctagagggt ttggatgtct gttattagta agcttgttgt ttctgattct 
5650
atactatgat ccgttgaata actctaacat tgagtatgtt tatgtgaaca 
5700
ttgctagctt ctgggattat ttggtagcac aaaagccatt ttcagtcatt 
5750
caaggcttta gttgaaatgc acaagcatac ttttattaac ttctttacaa 
5800
caataatgtt taactgcctt atcccatcca atccttaaac tcgacctgaa 
5850
tatgtatgtg acatacagta tgtctctcac gaaacgcaga aacttgctat 
5900
caactctaca aatggcttta agtaacacaa ctataatgta gcattaCTAA 
5950
GCGTCGCTTT CAGTTTCAGG TGCCCTCTGA TAATCCAACA TGCTCGGATC 
6000
TGCGTGGTAC TGCCCATACA AGGCATAAAC GGCAGTTGCA AGCACACTGA 
6050
CAACAACAAA TCTTATCCAT GCTTCATAAT GCAActgcac agtagcggaa 
6100
aaatcaaagg tagatcatat ggtatgtgaa attagtataa agttagttct 
6150
tagcgtgtac CTGAGCAAAT AAGAAGATGT TGAAGAAAAT GCAAACGGAT 
6200
GGCACAATGG GTACACCAGG ACAGCTAAAC CCAGAACCTA GAGGCAGAGC 
6250
ATAAGCctgg aagcgaaaag ctgaggggtt taacatgaag catagctagc 
6300
aaggcatttg cctgatttgt ggagacaacc atgagggtat atttcctaat 
6350
tgatgttaac aaacttctcc tctaaaccaa gaatgcaaag acttcaatag 
6400
tcacagactt tcatagtatc actgtagagt tctaagtgcc agaacatgct 
6450
agtggtggtc tctattttat gctgtatcag taaaagactt agtatctagc 
6500
attttaacag gggtgaaact tggttttttt attttatttt ttttggcgct 
6550
atgaaattaa gaagagtgtg ctatggaatt aaggcttata cttaaggcta 
6600
cttacTTGGC GATAATGAAG AACTGCTGAA GCAACAACTG CCACACCAAC 
6650
TGAGAGGAGA ATAAATATAA CTGAAGCACT GAAACGGTAA AATACGCCAG 
6700
CACCAAAACC ACTGCATGCA ATTATAACAA GGCAAATGAC GCCTTCCTGC 
6750
CAACTTGATG TCCATCTATT GGACGACTCT CTATCTTTTT TATCATTCAG 
6800
TCTCAATGCC ACAACACAAG CCGCAACAAC TGAATACCCA GTctgaagaa 
6850
atggaacacc gaaaataatg ttaaactgga aagtataagt atcaataaga 
6900
aaagcaaaga gatatttaaa attaagacct tgacgtacCA ATGTACCAAC 
6950
AGACAGAATA TGGGAAAGAC TATGTACATT AAATATGCCA GCTAAAACGC 
7000
CAGCTACAAT GCCGC
7050