fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G08465 YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1)

>AT1G08465.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 192
PstI CTGCA|G 42


Click here to view TAIR data

>AT1G08465.1 length:555
ATGTCTGTAG ATTTCTCATC TGAGCGTGTT TGCTATGTCC ACTGCAGCTT 
50
CTGCACCACG ATTTTAGCGG TAAGTGTACC ATACGCAAGT TTGTTCACAC 
100
TTGTGACGGT GAGATGTGGC CATTGTACCA ATTTGCTATC CCTCAACATT 
150
GGAGTTTCAC TTCATCAAAC CTCAGCTCCT CCCATTCACC AAGATCTTCA 
200
GCCTCATAGA CAGCACACAA CCTCTCTGGT GACAAGGAAA GATTGTGCAT 
250
CGTCTTCTAG GAGCACCAAC AATTTATCGG AAAACATTGA TCGTGAGGCT 
300
CCTAGAATGC CTCCTATTCG CCCACCGGAG AAAAGACAAC GTGTTCCTTC 
350
GGCCTACAAC AGATTCATCA AGGAGGAAAT CCAAAGGATT AAGGCTTGCA 
400
ATCCAGAGAT TAGCCACCGT GAGGCATTTA GCACTGCTGC TAAAAATTGG 
450
GCACATTTTC CTCACATTCA CTTTGGATTA AAGCTGGATG GCAACAAGAA 
500
AGGCAAGCAA TTAGACCAGT CAGTTGCAGG CCAAAAGTCT AATGGCTATT 
550
ACTAA
600

>AT1G08465.1 longest ORF length:184
MSVDFSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI 
50
GVSLHQTSAP PIHQDLQPHR QHTTSLVTRK DCASSSRSTN NLSENIDREA 
100
PRMPPIRPPE KRQRVPSAYN RFIKEEIQRI KACNPEISHR EAFSTAAKNW 
150
AHFPHIHFGL KLDGNKKGKQ LDQSVAGQKS NGYY
200