fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12540 bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT1G12540.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 247
StyI C|C[AT][AT]GG 483
XbaI T|CTAGA 171


Click here to view TAIR data

>AT1G12540.1 length:597
ATGACATTAA GCGAAATCAT GAAAGGAGAC GATGAGCCGA AGAACAAGAG 
50
AGCTAAACAT AAAGAGCTTG AGAGACAAAG AAGGCAAGAA AACACATCTC 
100
TATTCAAGAT TCTAAGATAT TTATTGCCAT CTCAATACAT AAAGGGTAAA 
150
CGTTCCTCGG CAGATCACGT TCTAGAAGCA GTGAATTACA TCAAAGACTT 
200
ACAGAAGAAG ATCAAAGAGG TCAGCGAAAA AAGAGATAGA ATCAAGAGAT 
250
CTATTACTCA TCCATCATCA AGAGGAGAAT TTTCAATAAG ATCATTAGCA 
300
TCATCAACTT GTTCTTGTGT TGGAGACACG AACATTGCTG TTGTGGTTAG 
350
GCCTTGTTTG ATCGGACTAG AGATCGTAGT AAGTTGTTGT AACAGACACG 
400
AATCTTGTCT ATCAAGTGTT CTTCAACTCC TGGCTCAAGA GCAATGCTTT 
450
AATATTGTTA GTTGCATCTC AACTAGACTA CACCAAGGAT TCATACACAC 
500
CATTGCTTCT GAGGTCGAGG AGGGAATAGA GGTTTATTTC TCAGAGCTTC 
550
AAGAAAAGAT AATCAAAATT GGAACCTCAA GAGTCACTAC TCGCTAG
600

>AT1G12540.1 longest ORF length:198
MTLSEIMKGD DEPKNKRAKH KELERQRRQE NTSLFKILRY LLPSQYIKGK 
50
RSSADHVLEA VNYIKDLQKK IKEVSEKRDR IKRSITHPSS RGEFSIRSLA 
100
SSTCSCVGDT NIAVVVRPCL IGLEIVVSCC NRHESCLSSV LQLLAQEQCF 
150
NIVSCISTRL HQGFIHTIAS EVEEGIEVYF SELQEKIIKI GTSRVTTR
200