fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12540 bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT1G12540.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BamHI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PstI, PvuII, SacI, SmaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 4375
EcoRI G|AATTC 3748, 5593, 5989
EcoRV GAT|ATC 526
HindIII A|AGCTT 1584, 3635
PacI TTAAT|TAA 4252, 5433
SalI G|TCGAC 2984
SpeI A|CTAGT 3282
StyI C|C[AT][AT]GG 913, 2571, 3032, 4611, 5954
XbaI T|CTAGA 2884, 4299


Click here to view TAIR data

>AT1G12540 genomic sequence (4000-4143,4273-4641,4760-4843,) length:6569
GGGAGTTCAG GATCTTCTTC ATCATCATTA TATGCTTCTC CTTTGTTATC 
50
TTGTACATCA TCACTACATG CCTCTCCTTT GTTATCTTCT ACAGCTCCTT 
100
TAATCAGCTC TTGCTTCTGT TTACTCGCTG GACTGGTGTT GAAATCAGTT 
150
CTTGCTTCTT TTTTTGGTGT TGGAATCTTA TGTTCCATTT CTCTAGCGGA 
200
TGTTCCGCGT TTCTCGCCTC TCGGGTTAGA TAATGTGGCG TAGACGGATT 
250
GAACGGTTTC TCTGATTTCA TTCTTCATCC CGTCTTCTGA TCTTATTATC 
300
CCCCATAAAC CATCTGAGAG CTGGCTTAGC ATCTTGCTCc tacaggaaac 
350
aatccaaaaa atttagtacg cttgtgtcat aatcatttac aacaacagga 
400
gttagctgaa tagaagaaaa tccctcttaa tttacCCGAC TTCTTCGAAT 
450
ATCGCATCAG AGAGTTGCCT GGTTTTCATA TTTTGAGCAC CATGTCGTTT 
500
CAAAGATGTT GACTCCTTGA CAACTGATAT CATATTATTC CGTAAATCCT 
550
Cctgcaatcc agtaaccgct ttaatagtca gatcacaatg caaacacagg 
600
cagtccagaa gaacaaagct caagatgttt atcaaacact gttaaaagaa 
650
aattccttgt tgccttacat aaacttctcc ggctaagaaa gtagtaacct 
700
tcactcttat ctaaatattc taccaagttg cgctaatgac aatgcccatt 
750
cgatggataa gtataaagac tcctcaaaga caatgaacac tataccagct 
800
ataagtaaga tgtcaaacca attcacagta agtgatactg aaattctgaa 
850
tcagctatag taggcctata gctgtgatct aacagcttaa caccattaag 
900
agaactctct cccctaggat ctgattcatc taagaaaaac taaaggcatc 
950
ttgataaact ctccgaatca tcaatggttt acttacttcc acgcctctaa 
1000
agcaacttca gatacactta tcccaaaatc aaaatcaaat gaccaaactt 
1050
tccctatctt aaacaactgg tattgttagg aatcccatat taacacaaac 
1100
cttccctgag accaagctca aacttatctt tgcacacaac taaccatatc 
1150
acttgtttca acactacaac agtacacacg aaacgaaaag atcaaatttt 
1200
ttggagtgag ttccgagaag ctactgatga aagtacctaa aaccatttat 
1250
ggaggactat tgggctcagt ctatatgaac caaaagagca aactttatac 
1300
aaattctcaa tcgaaatctc tattactcaa gtcaaactaa caaaagattc 
1350
caatttgatg atcttttgaa acaatcaaaa tcgactaatc attatcactg 
1400
gtcctaacaa agccacgaat gtactgggaa tcgagagaat atgaacccta 
1450
attagaggag caaggaaaga aaaacacacg atgtgcaatg cgaagacgac 
1500
ggagaaagag aaagagggct tacGTTTTCT TTGAGGCGGC GAATGATTTT 
1550
GAGACGGAGA CGATCAAAAT CTCCGTCGTC CTTAAGCTTC TCTACAACTT 
1600
CCTCTTTGCT TATCTTCCTC GCCATACCCA TCATctctca ctcttccttc 
1650
cttcctctgg attttctatt tctttccttt tatttttttc aaaaagtcgt 
1700
atttaataaa atcaataatt ttgtttgcat ctatttaaat tgtcagggct 
1750
tcatgatgca tcatggatct acaaatcaca aattaaacca taattgaata 
1800
gttaattagc tattttatag ttttaacaat attccttatc tatttttctt 
1850
ttgtaattag taaatttaac ttttaaactc ttgtgtttga accgatccac 
1900
ttgtaaaatt atagtttgtt cgtcttcatt cacgtttata ttttacgagt 
1950
gacctttgct gaatgttgat gtatatatgt tcatttaaca taattgccaa 
2000
catggtcacc accatgttca tgcacaaagc acttcataat cataatcatg 
2050
acacacgaca cgattatgtt gttatatgga acaagttcaa atggaccata 
2100
agatgaaagt cagacctaat cctgacccca atatctattc cctttaattc 
2150
attaaaatcc accaattatt gcaaaatttg gtatctttca agtgtccaca 
2200
tcatccttcg aaattaatta gactctaatt tgccccctat atgaagaatt 
2250
tggaatattg aaatcgttct taatcgagga tatataaata aataaatcct 
2300
ttaagataca aaagtaaccg attgtatttt ttaggactct catgtactcc 
2350
aacatttcat gatcttcatg taattaacgt aatcgaccat tatctttttg 
2400
gtaggtctta ttgttcaaga cttcagacat ttatataaat tagataacgt 
2450
tgaacttgta agacacaaca aaagcaaaat agaaaaacat agttcgaaat 
2500
ttgagatgag tttgtatagg aagatcgaaa aacatggttc taaagagaga 
2550
aaataactga gagttcactt ccaaggacat ttaaatgaga agaagtgatt 
2600
gttttttatt cgtgactaca catatctata tgactatacg cttaattttt 
2650
aaccgattat gaccaaatcc aatctcttaa aacaagagta ccacaaaata 
2700
aagtaaatta aatgttctgg tatgaccgta taaagtttct gtgatttata 
2750
attaaccaac aacgatcagt tttgctacgt gctcataagt atttagtata 
2800
ctgggtcttt gtcccgaaaa agtataatcg ataattcgat atgtaatgtt 
2850
acgaatcgtt tacttagatg ccatgcaatc atgtctagag aaaaaaaaat 
2900
cattttctta gtgctatttt aatataaata attatttaac ttttgcttga 
2950
aattgacata aatcttaata taccaacttt ttcgtcgacc aaaataatat 
3000
aaaatatagg tctatcatta tatgttttta tcctaggcta ggcggcctga 
3050
agaattaaat aatgtatttc ggcatctatg gtaaactata taaatgacaa 
3100
cactttctct ttataataca aattggtaac ctgaaaatta ctatgaacta 
3150
aatcgattaa tcgacaagaa gtactttttt atatattgga tgattttcat 
3200
ttgttttaga ttttctatac agttactaat agtagaaagt gttttgtata 
3250
tgaaaattaa atgatgtatg tattgttaag aactagtcat tgttttttga 
3300
tatgtgtgaa ttttttaaaa aatcagtatt tacataacat aggagttaag 
3350
aaactaactg aaactatttt ggctcaataa actgaaagtt aaaatcattt 
3400
caagaaccta gtgtcggatg aaacaaaata tatgaataaa gcacatttta 
3450
aatgtaagtt gcatgttttg cgtaacaata tatattccct aataaatagc 
3500
cactaaatgt acagctcaag ttaaatcgtt taaaatgcac accttcgaaa 
3550
taaatctaat cgtttagtat tagtatcact cactcaatcg tatctttcga 
3600
atagtttaac gttgttttct ttgaggtcac taaaaagctt gtcttttcaa 
3650
agaataagtt gaaaaaaatg gtcataagaa acaaaatctt ggatggtata 
3700
aaatgactaa cagcattgct gtcgaaattc tgcatcaaaa aacaagagaa 
3750
ttcatatagt acccaaaaat tctcttatta ccaaaacact cccataacca 
3800
ccaacaagaa aataaaaagg gcatgaattt tccagattct tcattgttca 
3850
caccaaattt tgcttatgaa aatgatttag atttctctag tttgatcact 
3900
ccttcaacgc gtgtatcatt ccaagaacct aaaccatgta atccagtcat 
3950
tcatagtgca gggattgaga acgatggaag acaaaactgt gagacgaccA 
4000
TGACATTAAG CGAAATCATG AAAGGAGACG ATGAGCCGAA GAACAAGAGA 
4050
GCTAAACATA AAGAGCTTGA GAGACAAAGA AGGCAAGAAA ACACATCTCT 
4100
ATTCAAGATT CTAAGATATT TATTGCCATC TCAATACATA AAGgtaagta 
4150
acattttcaa atttttctta tacaaattct gtctcatctc atgaagtcaa 
4200
aaaatttcta tagattatat agaagatccc cttagtctaa tcacggtaat 
4250
taattaacaa ttgtgtaaat agGGTAAACG TTCCTCGGCA GATCACGTTC 
4300
TAGAAGCAGT GAATTACATC AAAGACTTAC AGAAGAAGAT CAAAGAGGTC 
4350
AGCGAAAAAA GAGATAGAAT CAAGAGATCT ATTACTCATC CATCATCAAG 
4400
AGGAGAATTT TCAATAAGAT CATTAGCATC ATCAACTTGT TCTTGTGTTG 
4450
GAGACACGAA CATTGCTGTT GTGGTTAGGC CTTGTTTGAT CGGACTAGAG 
4500
ATCGTAGTAA GTTGTTGTAA CAGACACGAA TCTTGTCTAT CAAGTGTTCT 
4550
TCAACTCCTG GCTCAAGAGC AATGCTTTAA TATTGTTAGT TGCATCTCAA 
4600
CTAGACTACA CCAAGGATTC ATACACACCA TTGCTTCTGA Ggtaattatc 
4650
tataatctat cttcgatctg atttatgaag aaagagggag ttaatcttta 
4700
tattttatgt gatgagagat aaatattaat attttgggaa atttcttaaa 
4750
cttgtgtagG TCGAGGAGGG AATAGAGGTT TATTTCTCAG AGCTTCAAGA 
4800
AAAGATAATC AAAATTGGAA CCTCAAGAGT CACTACTCGC TAGtcagagt 
4850
ttattaaacc taaaaatttt atgaatttac gtcctaatta agatatatat 
4900
cctcaaccat tcccaccacc acaagcatgt tgtgttttta gtttttagaa 
4950
gtttatattg ttcaggatgt ggatgctgtt tgaattgttg actaatacaa 
5000
aaaaaattat gaattgtttt tttcctataa caagttgtat gaataatttg 
5050
attaatgcaa aattttgtga aatgacattt tctaacgatt tttgtaataa 
5100
tgaaatcgta taataagata gctcatattc attgatattt ttttttatta 
5150
cggtgtaaat attactgaat tatcgataca aaaacaaaag tatgttgata 
5200
aaaaagttgt tagatgtatc atgcatttat gcaatctatc tggtgttagg 
5250
ttgtggcatc ttttgcttgc ataataaaac atttttaaaa caatatcttg 
5300
aattatttta attatcgcga gacaattaag aaaaccgcaa catttaaata 
5350
tgtctttttt gcctcaatat aaatactaat gacagatatt aatattctta 
5400
gaaaaacata agtatttgac agataaataa ttaattaaga tgcttcagtt 
5450
tcaactaaac gaataaagaa gtaactgtga aagagcgaag aagagtcaca 
5500
caaaaaaaac aATGGCGGAA TCTTCAGAGC CTCCGGTTGT TCTCCTTCAC 
5550
CGACCACCGT CTCTAACTTT CATGGACGAG ATTCTGACTC GTGAATTCCG 
5600
TACTCTCATC ACCGACACTT CCTCATCGGA ATCACTCCCG AGCTTCTTCC 
5650
CCCGTCACGC CTCCTCCGCC AGAGCCTTCG TTATCAGCGG CAGACTTCCG 
5700
GTAACCGATG AACTCCTTTC TCATCTCCCT TCTCTCCAGA TTCTCGTCTG 
5750
CACTAGCGTC GGCATCGATC ACATCGATCT CGCCGCATGC AAGCGTCGCG 
5800
GCATCGTTAT CACCAACGCT GGCAACGCGT TTTCCGATGA CGTTGCTGAT 
5850
TGTGCCGTCG GTTTGCTTAT TAGCGTTCTC CGTCGTATTC CTGCCGCCGA 
5900
TCGTTACGTC CGGTCTGGTA ATTGGGCGAA ATTTGGGGAT TTTCAATTAG 
5950
GGTCCAAGgt ttgttcgaaa tcacaaactc tcaatttcga attctgatct 
6000
ataactgtag ttagatgatt acaaagggga aatttaggtt aaaagcgttt 
6050
ttttttattc tgagtaaaat ttgggaatag ctttagattg tggggttaca 
6100
gataaagtag agctatgtgt tagtaaaagt ctttgtggta gtgacttgtg 
6150
ataatattta ttgttacagG TAAGTGGGAA GAGAGTTGGG ATAGTTGGAT 
6200
TGGGGAGCAT TGGATCATTT GTTGCTAAAA GACTTGAATC ATTTGGCTGT 
6250
GTTATCTCTT ACAACTCAAG GAGTCAGAAA CAGAGTAGTC CATACCGGTA 
6300
TTACTCTGAC ATTCTCTCGT TAGCAGAGAA CAACGATGTA CTTGTCCTCT 
6350
GCTGCTCTTT GACAGACGAA ACGCACCATA TTGTGAATAG AGAAGTGATG 
6400
GAGTTGCTTG GTAAGGATGG GGTTGTGATC AATGTGGGAC GAGGAAAGTT 
6450
GATTGATGAG AAGGAGATGG TCAAGTGTTT GGTTGACGGT GTGATTGGTG 
6500
GTGCTGGTTT AGATGTGTTT GAGAATGAAC CGGCAGTTCC TCAGGAGTTG 
6550
TTTGGTTTGG ATAATGTAG
6600