fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12610 DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)

>AT1G12610.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtsI, ClaI, DraI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StyI, SwaI, Taqƒ¿I, TliI, TspRI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 195, 508, 534
AccIII(BspMII) T|CCGGA 297
AciI C|CGC 154, 237, 261, 530
AflIII A|CPuPyGT 73
AluI AG|CT 220, 325
ApaLI G|TGCAC 200
ApoI Pu|AATTPy 249, 450
AvaI C|PyCGPuG 166
BanI G|GPyPuCC 279
BsaWI [AT]|CCGG[AT] 276, 297
BsiEI CGPuPy|CG 538
BsiHKAI G[AT]GC[AT]|C 200
BslI CCNNNNN|NNGG 268, 384
BsoBI C|PyCGPuG 166
Bsp1286I G[GAT]GC[CAT]|C 200
BspEI T|CCGGA 297
BspT107I(HgiCI) G|G[TC][AG]CC 279
BsrFI Pu|CCGGPy 345
BstAPI GCANNNN|NTGC 198
BstF5I GGATGNN| 301
BstUI CG|CG 195, 508, 534
BstYI Pu|GATCPy 235
BtrI CAC|GTC 74
Cac8I GCN|NGC 45, 198
Cfr10I [AG]|CCGG[TC] 345
DdeI C|TNAG 37
DpnI GA-CH3|TC 234, 293, 435, 537
DpnII |GATC 234, 293, 435, 537
DraIII CACNNN|GTG 208
DrdI GACNNNN|NNGTC 121
EcoRI G|AATTC 450
Fnu4HI GC|NGC 154, 192, 269, 318, 327, 530
HaeIII GG|CC 33, 342, 516
HhaI GCG|C 194
HinP1I G|CGC 194
HinfI G|ANTC 258, 285, 505, 557
HpaII C|CGG 275, 281, 296, 344, 420
Hpy188I TCN|GA 133, 438
Hpy99I CG[AT]CG| 142, 206, 493
HpyCH4III ACN|GT 109, 369
HpyCH4IV A|CGT 73, 207
HpyCH4V TG|CA 199
MboI |GATC 234, 293, 435, 537
MseI T|TAA 63, 625
MspI C|CGG 275, 281, 296, 344, 420
MwoI GCNNNNN|NNGC 41, 189, 219, 261, 278, 324
NlaIII CATG| 240, 553
NlaIV GGN|NCC 279, 418, 516
NspI PuCATG|Py 241
PvuI CGAT|CG 538
Sau3AI |GATC 234, 293, 435, 537
Sau96I G|GNCC 516
StuI AGG|CCT 34
TfiI G|A[AT]TC 285
TseI G|C[AT]GC 192, 327
Tsp45I |GT[CG]AC 76, 112
Tsp509I |AATT 248, 364, 449
XcmI CCANNNNN|NNNNTGG 188


Click here to view TAIR data

>AT1G12610.1 length:630
ATGAATAATG ATGATATTAT TCTGGCGGAG ATGAGGCCTA AGAAGCGTGC 
50
GGGAAGGAGA GTGTTTAAGG AGACACGTCA CCCAGTTTAC AGAGGCATAA 
100
GGCGGAGGAA CGGTGACAAA TGGGTCTGCG AAGTCAGAGA ACCGACGCAC 
150
CAACGCCGCA TTTGGCTCGG GACTTATCCC ACAGCAGATA TGGCAGCGCG 
200
TGCACACGAC GTGGCGGTTT TAGCTCTGCG TGGGAGATCC GCATGTTTGA 
250
ATTTCGCCGA CTCCGCTTGG CGGCTTCCGG TGCCGGAATC CAATGATCCG 
300
GATGTGATAA GAAGAGTTGC GGCGGAAGCT GCGGAGATGT TTAGGCCGGT 
350
GGATTTAGAA AGTGGAATTA CGGTTTTGCC TTGTGCGGGA GATGATGTGG 
400
ATTTGGGTTT TGGTTCGGGT TCCGGCTCTG GTTCGGGATC GGAGGAGAGG 
450
AATTCTTCTT CGTATGGATT TGGAGACTAC GAAGAAGTCT CAACGACGAT 
500
GATGAGACTC GCGGAGGGGC CACTAATGTC GCCGCCGCGA TCGTATATGG 
550
AAGACATGAC TCCTACTAAT GTTTACACGG AAGAAGAGAT GTGTTATGAA 
600
GATATGTCAT TGTGGAGTTA CAGATATTAA 
650

>AT1G12610.1 longest ORF length:209
MNNDDIILAE MRPKKRAGRR VFKETRHPVY RGIRRRNGDK WVCEVREPTH 
50
QRRIWLGTYP TADMAARAHD VAVLALRGRS ACLNFADSAW RLPVPESNDP 
100
DVIRRVAAEA AEMFRPVDLE SGITVLPCAG DDVDLGFGSG SGSGSGSEER 
150
NSSSYGFGDY EEVSTTMMRL AEGPLMSPPR SYMEDMTPTN VYTEEEMCYE 
200
DMSLWSYRY
250