fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G12630 Integrase-type DNA-binding superfamily protein (.1)

>AT1G12630.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, AclI, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BanII, BbsI, BbvI, BcgI, BciVI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsmAI, BsmBI, BsmFI, BspHI, BspMI, BsrBI, BssHII, BstZ17I, Bsu36I, BtsI, DraIII, DrdI, EarI, EciI, EcoO109I, FauI, FokI, FseI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, MscI, , NarI, NheI, NotI, PI-PspI, PI-SceI(VDE), PacI, PleI, PmeI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, StuI, SwaI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 2060
AccI GT|[AC][TG]AC 2115, 2364
AccII(FnuDII) CG|CG 892, 4379, 4812
AccIII(BspMII) T|CCGGA 4547
AciI C|CGC 83, 707, 1852, 4169, 4265, 4283, 4295, 4507, 4648, 5037
AfeI AGC|GCT 430
AflII C|TTAAG 3352, 4891, 5755
AflIII A|CPuPyGT 1836, 3936, 3960, 5266
AgeI A|CCGGT 1207
AluI AG|CT 12, 112, 389, 755, 860, 1018, 1124, 1375, 1879, 2009, 2508, 3075, 3348, 3411, 4209, 4943, 5911
Aor51HI(Eco47III) AGC|GCT 430
ApoI Pu|AATTPy 473, 1872, 2034, 2342, 2475, 2489, 2663, 3259, 4553, 5126, 5648, 5894, 5940, 5983
AseI AT|TAAT 1515, 2373, 3342
AvaI C|PyCGPuG 1395, 1827
AvaII G|G[AT]CC 705, 1209
BamHI G|GATCC 4052, 4230
BanI G|GPyPuCC 954, 2060, 4075
BbvCI CC|TCAGC 943
BclI T|GATCA 932, 3217, 5175
BfaI C|TAG 341, 753, 1587, 1664, 1769, 2094, 2654, 3433, 4772, 5411, 5726
BglI GCCNNNN|NGGC 4289
BglII A|GATCT 1579
BsaAI PyAC|GTPu 796, 3935, 3959, 4392, 4602
BsaBI GATNN|NNATC 2573, 3305
BsaJI C|CNNGG 62, 568, 1163, 4113, 4150, 4226
BsaWI [AT]|CCGG[AT] 1207, 2249, 3052, 4055, 4072, 4547
BsiEI CGPuPy|CG 4530
BsiWI C|GTACG 4604
BslI CCNNNNN|NNGG 300, 520, 739, 1168, 3976, 4048
BsmI GAATGCN| 185, 1060, 2223
BsoBI C|PyCGPuG 1395, 1827
Bsp1286I G[GAT]GC[CAT]|C 146
BspDI AT|CGAT 2173, 5364
BspEI T|CCGGA 4547
BspT107I(HgiCI) G|G[TC][AG]CC 954, 2060, 4075
BsrDI GCAATGNN| 2193, 4307
BsrFI Pu|CCGGPy 1207, 4029
BsrGI T|GTACA 168, 4060
BsrI ACTGGN| 5520
BssKI |CCNGG 2235, 2264, 4226, 4246
BssSI C|TCGTG 5670
BstAPI GCANNNN|NTGC 716
BstBI TT|CGAA 3371, 4367
BstEII G|GTNACC 2453, 3856, 6081
BstF5I GGATGNN| 4315, 4496, 4520, 4539
BstNI CC|[AT]GG 4226
BstUI CG|CG 892, 4379, 4812
BstXI CCANNNNN|NTGG 2135, 6012
BstYI Pu|GATCPy 730, 1579, 2803, 2843, 4052, 4230, 4410, 5079
BtgI C|CPuPyGG 62, 1163, 4150
BtrI CAC|GTC 909, 1912
Cac8I GCN|NGC 1571, 3981, 4029, 4475
Cfr10I [AG]|CCGG[TC] 1207, 4029
ClaI AT|CGAT 2173, 5364
DdeI C|TNAG 76, 942, 1152, 1527, 1812, 4033, 4865, 5277, 5443, 5596
DpnI GA-CH3|TC 729, 931, 1129, 1254, 1359, 1459, 1578, 1590, 1683, 2251, 2493, 2503, 2802, 2842, 3216, 3884, 4051, 4229, 4409, 4583, 4796, 5078, 5114, 5174, 5306
DpnII |GATC 729, 931, 1129, 1254, 1359, 1459, 1578, 1590, 1683, 2251, 2493, 2503, 2802, 2842, 3216, 3884, 4051, 4229, 4409, 4583, 4796, 5078, 5114, 5174, 5306
DraI TTT|AAA 1201, 1889, 5028, 5424, 5544
EaeI Py|GGCCPu 1180, 4530
EagI C|GGCCG 4530
EcoNI CCTNN|NNNAGG 300
EcoRI G|AATTC 4553, 5894, 5940
EcoRV GAT|ATC 1707
Fnu4HI GC|NGC 4163, 4169, 4184, 4268, 4283, 4289, 4295, 4301, 4507
FspI TGC|GCA 1546
HaeII PuGCGC|Py 430
HaeIII GG|CC 745, 1179, 2920, 4529
HhaI GCG|C 429, 893, 1545, 4378, 4504
HinP1I G|CGC 429, 893, 1545, 4378, 4504
HincII GTPy|PuAC 2115, 2364, 2639, 3243
HindIII A|AGCTT 13, 861, 2010, 5912
HinfI G|ANTC 1778, 1843, 1859, 1907, 1931, 2026, 2214, 2772, 2915, 3722, 4068, 4102, 4128, 4256, 4541, 5189, 5357
HpaII C|CGG 1181, 1206, 2234, 2248, 2263, 3051, 3976, 4028, 4041, 4054, 4071, 4246, 4546
Hpy188I TCN|GA 33, 225, 652, 727, 1151, 1275, 1380, 1528, 1840, 1883, 2023, 2029, 2254, 2292, 3201, 3458, 4097, 4535, 5278, 5290
Hpy99I CG[AT]CG| 504, 3012, 4234, 4416, 4512, 4533
HpyCH4III ACN|GT 60, 229, 247, 591, 801, 1106, 1286, 1431, 2977, 3681, 3817
HpyCH4IV A|CGT 690, 795, 908, 1834, 1911, 2407, 2909, 3934, 3958, 4391, 4601, 4605, 4821, 5919
HpyCH4V TG|CA 124, 348, 598, 768, 839, 1060, 1083, 1117, 1572, 3039, 3303, 4856, 5871, 6016
KpnI GGTAC|C 2060
MboI |GATC 729, 931, 1129, 1254, 1359, 1459, 1578, 1590, 1683, 2251, 2493, 2503, 2802, 2842, 3216, 3884, 4051, 4229, 4409, 4583, 4796, 5078, 5114, 5174, 5306
MseI T|TAA 686, 888, 1200, 1316, 1454, 1514, 1557, 1866, 1888, 2006, 2013, 2274, 2330, 2372, 2379, 2530, 2595, 2659, 2754, 2892, 2903, 2987, 3109, 3166, 3252, 3341, 3351, 3358, 3422, 3429, 3688, 3888, 3913, 4196, 4654, 4692, 4704, 4779, 4890, 4933, 5027, 5044, 5320, 5423, 5543, 5588, 5602, 5704, 5754, 5781, 5811, 5916, 5978, 5991, 6027, 6067
MslI CAPyNN|NNPuTG 2963, 4670
MspA1I C[AC]G|C[GT]G 4285
MspI C|CGG 1181, 1206, 2234, 2248, 2263, 3051, 3976, 4028, 4041, 4054, 4071, 4246, 4546
MwoI GCNNNNN|NNGC 716, 900, 1479, 4038, 4160, 4190, 4289, 4301, 4471, 4484, 4784
N.BstNBI GAGTCNNNN|N 1912, 5194
NaeI GCC|GGC 4029
NciI CC|[CG]GG 2235, 2264, 4246
NcoI C|CATGG 1163, 4150
NdeI CA|TATG 3336, 4687, 5353
NgoMIV G|CCGGC 4029
NlaIII CATG| 357, 736, 1162, 1855, 4149, 4437, 4883, 4959, 5061, 5171, 5265, 5500
NlaIV GGN|NCC 442, 954, 1073, 2060, 2765, 4052, 4075, 4230, 4250
NruI TCG|CGA 4813
NsiI ATGCA|T 1061, 3304, 5872
NspI PuCATG|Py 737, 5266
PaeR7I C|TCGAG 1395, 1827
PciI A|CATGT 5266
PflFI GACN|NNGTC 909, 1298, 1666, 2749
PflMI CCANNNN|NTGG 520, 739
PmlI CAC|GTG 3935, 3959
PsiI TTA|TAA 583, 3775
PspGI |CC[AT]GG 4226
RsaI GT|AC 167, 793, 1817, 2059, 2245, 4059, 4603, 5777
SalI G|TCGAC 2115, 2364
Sau3AI |GATC 729, 931, 1129, 1254, 1359, 1459, 1578, 1590, 1683, 2251, 2493, 2503, 2802, 2842, 3216, 3884, 4051, 4229, 4409, 4583, 4796, 5078, 5114, 5174, 5306
Sau96I G|GNCC 705, 1209, 2920
ScrFI CC|NGG 2235, 2264, 4226, 4246
SfcI C|TPuPyAG 310, 1738, 2149, 3079
SmlI C|TPyPuAG 1395, 1827, 1862, 3352, 4891, 5755
SnaBI TAC|GTA 796, 4606
SpeI A|CTAGT 3434
SspI AAT|ATT 421, 3007, 3427, 3697, 4930, 5809, 5967
StyI C|C[AT][AT]GG 568, 1163, 4150
Taqƒ¿I T|CGA 44, 464, 856, 1067, 1121, 1252, 1357, 1394, 1501, 1826, 2105, 2114, 2172, 2216, 2363, 2401, 2505, 2575, 2696, 3013, 3130, 3297, 3370, 3643, 4366, 4372, 5186, 5363, 5890
TfiI G|A[AT]TC 1843, 1931, 2026, 2214, 2772, 2915, 3722, 4068, 4102, 4128, 4256, 5357
TliI C|TCGAG 1395, 1827
TseI G|C[AT]GC 4163, 4184, 4268, 4286, 4292, 4298
Tsp45I |GT[CG]AC 452, 1428, 1909, 2685, 3855, 3939, 5262, 5551, 6080
Tsp509I |AATT 472, 554, 1367, 1512, 1549, 1559, 1871, 1901, 2033, 2090, 2109, 2121, 2341, 2458, 2474, 2488, 2516, 2528, 2644, 2662, 2928, 3034, 3168, 3258, 3287, 3471, 3546, 3567, 3766, 3771, 3915, 4552, 4656, 4735, 4781, 4834, 5041, 5046, 5125, 5178, 5322, 5546, 5628, 5647, 5658, 5702, 5741, 5893, 5939, 5958, 5982, 5988
TspRI NNCA[CG]TGNN| 232, 1764
Tth111I GACN|NNGTC 909, 1298, 1666, 2749
XbaI T|CTAGA 2655
XcmI CCANNNNN|NNNNTGG 62, 743, 4159
XhoI C|TCGAG 1395, 1827
XmnI GAANN|NNTTC 2746, 5130, 5679


Click here to view TAIR data

>AT1G12630 genomic sequence (4008-4586,) length:6086
AGCATATCCA AAAAGCTTTT CTTCAATCTA CCATCCGATA ACATATCGAC 
50
AACCATCTTT ACCGTGGAAG CATCAACTGA GAACCCGCAC CTCTTTATTT 
100
CTTCAATAAG TTTAGCTGAT TTGGTTGCAT CACCTTCTCC AAGATGTGCC 
150
CTGATGAGTA TGTTGTATGT ACAACCATTT GGCGAATGCC CATCCTCTTC 
200
CATTTTTCTA AACAACAGGT CTGCTTCAGA CAGTGAGCCT TTCTTACACA 
250
GTCCCCCAAT CATTATATTG TATGTTTTGA CATCGGGCTT CACTCCTTTG 
300
AGAGGGAGGC TACAGAATAA ATCCCAAGCA TCATCCACCT TACTAGCATT 
350
GCACATCCCA TGAATGATGA TGTTATAGAT ACCAATATCA AGCTCCATCT 
400
TACTCTTCTC TATTTTTTCA AATATTTCCA GCGCTTTTTC TGGTTCCCCA 
450
TTGTCACACA ACCCATCGAG CAAAATTTTG TAGGACACAA TATCAGGACG 
500
AACACGACGA GAAACCATCT CTTGGAAGAG TTCTTTGGCA ACTTCAAGTT 
550
TTCCCAATTC ACAAAATCCT TGGATAAGAG TGTTATAAGT AACCGTATCT 
600
GCAACCACTC CTCTCAAAGA CATTTTGCGG AAGAGTTCCA AACCATCGTC 
650
AATCAGATTA GCCTTACAAT ATCCATTTAT GAGGATATTA AACGTCCTGA 
700
TATTAGGACC GCATCCTTTG CTAACCATCA GATCCAGCAT GTGGTTGGCC 
750
TTATCTAGCT GGTTCTCCTT GCAAAACCCA TCTATCAAAG AAGTGTACGT 
800
AACAGTATCA GGAGATATGC CTCGTTGTAT CATCTCCTTG TGCAGTTCTT 
850
CAGCCTCTCG AAGCTTTCCC TCTTTCACAA AACAATCTAT TAACGCGCTG 
900
AAAGCGACCA CGTCTGGTGT GATTTTCCTT TTGATCATAT CCCTCAGCAA 
950
CTTGGCACCA TCATCCCATC TACCAGCGTA ACAAAAGCCT CTAATGAGAG 
1000
TGGTGTAGAT AATAATATCA GCTTTGAACC CTTTGATTTC CATTTCATTG 
1050
AAAAGGTTGA ATGCATTGTC GAGGCTCCCG TCTTTGCACA GACCATCAAT 
1100
GATGATACTG TATTTGACTG CATCGAGCTT GATCTTTCTT TCTTCCATCT 
1150
TTCTGAGCAA CTCCATGGCA AGGGCAGTTT GGCCGGACTT ACACATTACT 
1200
TTTAAAACCG GTCCATAAGT TACTTCATTG GGTTGAAAGC CAGTCTCAAC 
1250
CATTCGATCA ATCAAAAGCA CAGCATCAGA GACTTTACCG TTGAGACAAA 
1300
GTCCATTGAC CAGAGCGTTA AGCGTTATGA GAGTGGGTTT ATGTCCCATT 
1350
TCAACCATTC GATCAACTAA TTCCAGAGCT TCGGAAACTC TACCCTCGAG 
1400
ACATAATCCG TTTATCAAAG TTGAAAATGT GACTGTATCA GGCTCATACC 
1450
CAAGTTTAAT GATCTTCCCC ATAGCAGAAA AAGCCAAAGA GAGTTTACGA 
1500
CATCGACAAC AGCAATTAAT CATAATACTC AGAGTGTAGA GGTTATGCGC 
1550
AATTCCCTTT AATTCCATTT GCTTGCAGAG ATCTAACACT AGATCATATT 
1600
GCTTTGTTCT GGCAACAACA CTAAACAATC TACTGAAATC AATAAGACGA 
1650
GGACGAGGAC GAGACCTAGT CATTTCTTGA AACAGATCAA CAGCATCATC 
1700
TTCCTTGATA TCAACAATCC CACTTCTCAA TCTCTCTCTA TAGGAGACTT 
1750
TCCCTTTCCC ATCACTGACA CTAGAAAAGA CTCGTCCATA GCAAGACAAG 
1800
AATAAAGCAG TTCTTAGAGT ACCTGTCTCG AGAAGACGTG TCTGAATCAA 
1850
TCCCCGCATg actcaagtta agaatttgaa agctctgatt taaaaaaaaa 
1900
aaaattggag tcacgtcttc ggttttgtgc tgattcgttt gttcggcttc 
1950
cacaagcacc aatgtctgct cattacacct ctttcacaca caataaaaca 
2000
aaaagattta agctttaaga acttctgatt cggaaatttc aacaacgatg 
2050
ctatatatgg gtaccttgaa agtgaaaact tgaaaccttc caattctagc 
2100
gagttatcga aattgtcgac ccaattcgcc aacaaggtgg cactaaatct 
2150
acagaaaaga aaacccagac acatcgatac gaagaacgaa gcaatgagaa 
2200
acctgaaatc tttagattcg agaatgcttg aagaaccggg ttgaatgtac 
2250
cggatcagat aaaaccgggt tgtctttaac cttctgtttc attcggagtt 
2300
gttgataaaa tgtttttttt ttcttctcct tttaataaaa tgaatttgtt 
2350
tttttttttc tttgtcgacc agattaatac ttaataggat agtttttttt 
2400
tatcgaccac gttgaacttc aaaaagtttt tttttttttt ggttggttag 
2450
tggttaccca atttgaaaaa ggacgaattt attggattga atttgatcct 
2500
tgaagatcga gctaaacaat tttaccataa attaactaca tcaataaaag 
2550
taaaaagaga aaaataatga tatatatcga agcacactaa acttgtttaa 
2600
gatgttggag aaaacactaa acaaggagat attaccaagt tgactaatta 
2650
cacatctaga ttaaattcct gataatacat ctcccgtgac aaaaacttcg 
2700
atattgttca tatcaacgct tctgtttccg tatgtaaaag tgaaagactt 
2750
cgtctttaac attcggttcc aagaatcatc acactatcgt ccacttgcga 
2800
gaagatccat cataatctca atgttggata tgaactctcc caagatccac 
2850
catatctttg acattttatt ttatgaatgt tttttttttt tggttaagga 
2900
gaggttaagg acgttgattc gggccgagaa attgtatttt atttttatga 
2950
atgtttctca ccaagatggc atttactact gtgggttttt aacttccttc 
3000
caagccaata ttcgtcgaag cccgttggac accctaattt tgcattatcg 
3050
ttccggtggt ttagcatttc taatgtagct atagttagta ggttagattt 
3100
tactatttgt ttaacagcga tgttattata gtcgattgta aagtatatat 
3150
atatatataa gtttttctta atttatgtag ttcagtcatt tttctcttat 
3200
atcggatatg tctatgtgat caactttgtt tgtggcattc tcgtcaacca 
3250
ttcttaatga atttatatga taatcaaaac caaaacaaaa ttgaaccttc 
3300
gatatgcatc tttcaactaa tatatgcgta tgcttcatat gattaatata 
3350
gcttaagtat taacatatat ttcgaaatat atatgtttat atgctttgta 
3400
ttgattatat atagcttaca gccttaaata ttaactagta actaaacaag 
3450
ataacttatc ggataaagta taaattatat atatatatat atatatatgt 
3500
tttttttttc tttttctttt ctaaatacga gatatatata tagtataaat 
3550
tatagttttt tcttactcaa ttattattac aaaaataacc ccaacaaatg 
3600
atgacaaaaa aaaaaaaaaa cccccaacaa gagccaacac actttcgaca 
3650
accccaagtg agaaagtgaa agagaataac aactgtgtgt taagaaaata 
3700
ttagtgaaat aacccttttc ttgattcatt tcgtatttga atatcaatct 
3750
ctcactaaac cctaactaat tcaattataa tcgtctttac agagatatac 
3800
agaacacata tctatatact gtttaccttt cagttctata tatatgtggc 
3850
tgatggtcac catataaatc ataccaaatg tccctgatct taacccaaaa 
3900
cttcttcatc ttctttaatt agtttgccac ctcgcacgtg tgacaaatcc 
3950
ttcttcgcca cgtgtgaaaa cccttctccg gcttgctact aatatacgac 
4000
taatagtATG AATAGTTCAA TGGCTTCTGC CGGCTTAGGT AGCCGGAGAA 
4050
AGGATCCGGT GTACAGAGGA ATCCGGTGCC GAAGTGGGAA ATGGGTCTCC 
4100
GAGATTCGTG AGCCGAGGAA AACCACGAGA ATCTGGCTTG GAACTTACCC 
4150
CATGGCAGAG ATGGCAGCAG CCGCCTATGA TGTGGCTGCT ATGGCTCTTA 
4200
AAGGAAGAGA AGCTGTCTTG AACTTCCCTG GATCCGTCGG GTCATACCCG 
4250
GTTCCTGAAT CAACATCCGC AGCAGATATA CGAGCCGCTG CGGCAGCCGC 
4300
AGCAGCAATG AAGGGATGTG AGGAAGGGGA GGAGGAGAAA AAGGCAAAGG 
4350
AGAAGAAGAG TAGTAGTTCG AAGTCGAGAG CGCGTGAGTG CCACGTAGAT 
4400
AATGATGTTG GATCTTCGTC GTGGTGTGGG ACAGAGTTCA TGGACGAAGA 
4450
AGAAGTCTTG AATATGCCTA ATCTGCTGGC TAATATGGCA GAAGGGATGA 
4500
TGGTTGCGCC GCCGTCGTGG ATGGGTTCTC GGCCGTCGGA TGACTCTCCG 
4550
GAGAATTCAA ATGATGAGGA CTTGTGGGGC TATTGAtcgg tttgtgttgt 
4600
ccacgtacgt atatgtaatc attatttgtt cttgttgctt tttttttttc 
4650
cgcccttaat tatttcactt gtatgatata tcaaatcata tgtttaatgt 
4700
tttatttaag attgtttcta ctttcttgta tcgttgaatt agggtttgcg 
4750
tttggagttt ttagggttat caactagggc ttaattagcc ttatagtgat 
4800
cctcctttag tttcgcgact tcacgttttg atttcaatta ttactcttat 
4850
tcctatttgc atcttcttag tcaagaatat atttcatgtt cttaagtttg 
4900
tttttgttca atataaagat gagattatga atatttaata taatagctac 
4950
tccttatata catgaactaa aaaaagtctt tgacatatat atatcttcag 
5000
gtggaacata aaaacggagg tttttttttt aaataacacc gcaatttaat 
5050
tcggcaaagt ttcatgtttg tcaatcaaag atccaataaa tatgatgagt 
5100
ataatatgaa tatatgatct ttgtggaatt tcttctcttg tttattgaga 
5150
ttagtctttt tcttatataa cccatgatca atttgtttcg agtcttttga 
5200
ctttctatgt atcatttttt tgcgtttttt ctacatacac aacatatatc 
5250
tatctatttt tcgtcacatg ttcgttgctc agatatatat tcggaaatcc 
5300
atccagcgat ctatattcca tttaattcgt ctcgtagtga tatatatgtt 
5350
ttcatatgaa tcaatcgatt gattgatgct tattcacaca atgatacata 
5400
tattatattc atctagtgtt ccttttaaaa agttttgatg ttcctgagtt 
5450
tcctttttta gatatgtttt tgttgtaaag gttttgccat atatgtatag 
5500
acatgagtgg tgttttctta ctgggtcatt ttttgtcgtt ttctttaaat 
5550
tgtgacacta tcttgctaat aaagtgatat atttttgtat taaaatctta 
5600
gtcttaacta tatactccat ctgttttaca attattgtca ttttgataaa 
5650
tttcatagaa attacaaaac tcgtgaaaca tttcattatg tatttgtaaa 
5700
tcaaattaaa taaactcttg gtatattcta gtttttcatt gtaatttggt 
5750
tttacttaag agtaagacca tatattgtgt acttaacaca aacatttatt 
5800
tatattgaaa tattaagaaa aaacttattt tgaaaaatag aaacgatgat 
5850
aaaatgatat tctgttttga aatgcataaa gtatcatttt atcgaattca 
5900
aatatacata taagctttta acgtatggag agtaaataag aattcttact 
5950
tgaaacacga attagtaata ttatttgtgt taaaattcta atttaagata 
6000
taacgccaaa acgatggtgc aaaaggtttt aacaccaatg tttttacctg 
6050
aaacggacaa aagagaggtt aataagagag gtgacc
6100