fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G19210 Integrase-type DNA-binding superfamily protein (.1)

>AT1G19210.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 141, 154, 240
AluI AG|CT 259, 477, 504
ApoI Pu|AATTPy 549
BanII GPuGCPy|C 114
BsaBI GATNN|NNATC 500
BsaJI C|CNNGG 174, 426
BsaWI [AT]|CCGG[AT] 213, 457
BslI CCNNNNN|NNGG 387
Bsp1286I G[GAT]GC[CAT]|C 114
BspDI AT|CGAT 345
BssKI |CCNGG 426
BstF5I GGATGNN| 292
BstNI CC|[AT]GG 426
BstUI CG|CG 141, 154, 240
BtgI C|CPuPyGG 174
Cac8I GCN|NGC 144
ClaI AT|CGAT 345
DdeI C|TNAG 130, 247
DpnI GA-CH3|TC 76, 217, 243, 461
DpnII |GATC 76, 217, 243, 461
Fnu4HI GC|NGC 138, 156, 261, 476
HhaI GCG|C 140
HinP1I G|CGC 140
HinfI G|ANTC 294, 330, 357
HpaII C|CGG 212, 222, 456
Hpy188I TCN|GA 72, 79, 246, 360, 380, 408, 444, 469
Hpy99I CG[AT]CG| 152, 382
HpyCH4III ACN|GT 384
HpyCH4IV A|CGT 100, 229, 351
HpyCH4V TG|CA 21
MboI |GATC 76, 217, 243, 461
MspI C|CGG 212, 222, 456
MwoI GCNNNNN|NNGC 144, 273, 482
NlaIII CATG| 535
NlaIV GGN|NCC 532
NruI TCG|CGA 241
PspGI |CC[AT]GG 426
RsaI GT|AC 31
Sau3AI |GATC 76, 217, 243, 461
ScrFI CC|NGG 426
Taqƒ¿I T|CGA 17, 150, 344
TfiI G|A[AT]TC 294, 330, 357
TseI G|C[AT]GC 261, 476
Tsp509I |AATT 194, 278, 548


Click here to view TAIR data

>AT1G19210.1 length:558
ATGGAAGGGT CGTCTTCTTC GATGCAGTCA AAGTACAAAG GAGTGAGGAA 
50
GAGGAAATGG GGAAAATGGG TTTCAGAGAT CAGACTTCCC AACAGCAGAG 
100
AACGTATTTG GTTGGGCTCT TACGATACTC CTGAGAAGGC GGCGCGTGCT 
150
TTCGACGCGG CTCTTTATTG TCTCCGTGGC AACAACGCAA AGTTCAATTT 
200
CCCTGATAAT CCTCCGGTGA TCTCCGGCGG ACGTAACTTG TCGCGATCTG 
250
AGATAAGAGA AGCTGCTGCG AGGTTCGCTA ATTCGGCGGA GGATGATTCA 
300
AGTGGCGGAG CAGGATACGA GATACGGCAA GAATCTGCTT CAACATCGAT 
350
GGACGTTGAT TCGGAGTTTT TGAGTATGCT TCCGACGGTT GGTTCGGGTA 
400
ACTTCGCTTC GGAGTTTGGG TTATTCCCTG GGTTTGATGA TTTCTCCGAT 
450
GAATACTCCG GTGATCGTTT CAGAGAGCAG CTTTCGCCTA CACAAGATTA 
500
TTATCAGCTT GGAGAAGAGA CTTACGCCGA TGGTTCCATG TTTCTTTGGA 
550
ATTTTTGA
600

>AT1G19210.1 longest ORF length:185
MEGSSSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTPEKAARA 
50
FDAALYCLRG NNAKFNFPDN PPVISGGRNL SRSEIREAAA RFANSAEDDS 
100
SGGAGYEIRQ ESASTSMDVD SEFLSMLPTV GSGNFASEFG LFPGFDDFSD 
150
EYSGDRFREQ LSPTQDYYQL GEETYADGSM FLWNF
200