|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G23380 | KNAT6S, KNAT6L, KNAT6 | KNOTTED1-like homeobox gene 6 (.1.2) |
>AT1G23380.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, DraIII, DrdI, EarI, EciI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PstI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccIII(BspMII) | T|CCGGA | 210 |
| AciI | C|CGC | 114, 177 |
| AclI | AA|CGTT | 235 |
| AflIII | A|CPuPyGT | 508 |
| AluI | AG|CT | 97, 156, 256, 298, 415, 426, 534, 720, 775, 844 |
| ApoI | Pu|AATTPy | 436, 694 |
| AvaII | G|G[AT]CC | 668 |
| BamHI | G|GATCC | 148 |
| BclI | T|GATCA | 624 |
| BfaI | C|TAG | 350, 482, 954 |
| BsaJI | C|CNNGG | 569, 974 |
| BsaWI | [AT]|CCGG[AT] | 66, 210, 333 |
| BsiEI | CGPuPy|CG | 26, 203 |
| BsiHKAI | G[AT]GC[AT]|C | 326 |
| BslI | CCNNNNN|NNGG | 825 |
| Bsp1286I | G[GAT]GC[CAT]|C | 326 |
| BspDI | AT|CGAT | 307 |
| BspEI | T|CCGGA | 210 |
| BspHI | T|CATGA | 627 |
| BsrFI | Pu|CCGGPy | 28, 118 |
| BsrGI | T|GTACA | 11 |
| BsrI | ACTGGN| | 553 |
| BssKI | |CCNGG | 568, 665 |
| BstF5I | GGATGNN| | 4, 586, 643, 949 |
| BstNI | CC|[AT]GG | 568 |
| BstYI | Pu|GATCPy | 148, 215, 480 |
| Cfr10I | [AG]|CCGG[TC] | 28, 118 |
| ClaI | AT|CGAT | 307 |
| DdeI | C|TNAG | 164, 424, 580, 612 |
| DpnI | GA-CH3|TC | 147, 202, 214, 419, 479, 623, 960 |
| DpnII | |GATC | 147, 202, 214, 419, 479, 623, 960 |
| DraI | TTT|AAA | 717 |
| EaeI | Py|GGCCPu | 26 |
| EagI | C|GGCCG | 26 |
| EcoNI | CCTNN|NNNAGG | 825 |
| EcoO109I | PuG|GNCCPy | 669 |
| Fnu4HI | GC|NGC | 195, 533 |
| HaeIII | GG|CC | 25, 810 |
| HindIII | A|AGCTT | 98, 299, 721 |
| HinfI | G|ANTC | 71, 359, 561, 794, 951 |
| HpaII | C|CGG | 27, 65, 117, 209, 332, 664 |
| Hpy188I | TCN|GA | 39, 53, 87, 135, 145, 150, 189, 217, 322, 477, 579, 600, 921 |
| Hpy99I | CG[AT]CG| | 152, 187 |
| HpyCH4III | ACN|GT | 246, 491 |
| HpyCH4IV | A|CGT | 234, 446, 506, 904 |
| HpyCH4V | TG|CA | 531, 850 |
| MboI | |GATC | 147, 202, 214, 419, 479, 623, 960 |
| MfeI | C|AATTG | 882 |
| MseI | T|TAA | 716 |
| MspI | C|CGG | 27, 65, 117, 209, 332, 664 |
| MwoI | GCNNNNN|NNGC | 177, 204, 264, 774 |
| N.BstNBI | GAGTCNNNN|N | 76, 566 |
| NciI | CC|[CG]GG | 665 |
| NlaIII | CATG| | 76, 626 |
| NlaIV | GGN|NCC | 148, 542, 668 |
| PpuMI | PuG|G[AT]CCPy | 669 |
| PsiI | TTA|TAA | 381, 804, 890 |
| PspGI | |CC[AT]GG | 568 |
| PvuI | CGAT|CG | 203 |
| RsaI | GT|AC | 10, 448, 549, 711 |
| Sau3AI | |GATC | 147, 202, 214, 419, 479, 623, 960 |
| Sau96I | G|GNCC | 668 |
| ScaI | AGT|ACT | 712 |
| ScrFI | CC|NGG | 568, 665 |
| SgrAI | CPu|CCGGPyG | 119 |
| SmlI | C|TPyPuAG | 724 |
| Taqƒ¿I | T|CGA | 200, 306, 558 |
| TfiI | G|A[AT]TC | 359, 794, 951 |
| TseI | G|C[AT]GC | 533 |
| Tsp45I | |GT[CG]AC | 62 |
| Tsp509I | |AATT | 14, 435, 693, 881 |
Click here to view TAIR data
>AT1G23380.1 length:984
ATGGATGGAA TGTACAATTT CCATTCGGCC GGTGATTATT CAGATAAGTC | 50 |
GGTTCTGATG ATGTCACCGG AGAGTCTCAT GTTTCCTTCC GATTACCAAG | 100 |
CTTTGCTATG TTCCTCCGCC GGTGAAAATC GTGTCTCTGA TGTTTTCGGA | 150 |
TCCGACGAGC TACTCTCAGT AGCCGTCTCC GCTTTGTCGT CGGAGGCGGC | 200 |
TTCGATCGCT CCGGAGATCC GAAGAAATGA TGATAACGTT TCTCTAACTG | 250 |
TCATCAAAGC TAAAATCGCT TGTCATCCTT CGTATCCTCG CTTACTTCAA | 300 |
GCTTACATCG ATTGCCAAAA GGTCGGAGCA CCACCGGAGA TAGCGTGTTT | 350 |
ACTAGAGGAG ATTCAACGGG AGAGTGATGT TTATAAGCAA GAGGTTGTTC | 400 |
CTTCTTCTTG CTTTGGAGCT GATCCTGAGC TTGATGAATT TATGGAAACG | 450 |
TACTGCGATA TATTAGTGAA ATACAAATCG GATCTAGCAA GACCGTTTGA | 500 |
CGAGGCAACG TGTTTCTTGA ACAAGATTGA GATGCAGCTA CGGAACCTAT | 550 |
GTACTGGTGT CGAGTCTGCC AGGGGAGTTT CTGAGGATGG TGTAATATCA | 600 |
TCTGACGAGG AACTGAGTGG AGGTGATCAT GAGGTAGCAG AGGATGGGAG | 650 |
ACAAAGATGT GAAGACCGGG ACCTCAAAGA TAGGTTGCTA CGCAAATTTG | 700 |
GAAGCCGTAT TAGTACTTTA AAGCTTGAGT TCTCAAAGAA GAAGAAGAAA | 750 |
GGAAAGTTAC CAAGAGAAGC AAGACAAGCT CTTCTTGATT GGTGGAATCT | 800 |
CCATTATAAG TGGCCTTACC CTACTGAAGG AGATAAGATA GCATTAGCTG | 850 |
ATGCAACGGG GTTAGACCAA AAACAAATCA ACAATTGGTT TATAAACCAA | 900 |
AGGAAACGTC ATTGGAAGCC ATCAGAGAAT ATGCCTTTCG CTATGATGGA | 950 |
TGATTCTAGT GGATCATTCT TTACCGAGGA ATGA | 1000 |
>AT1G23380.1 longest ORF length:327
MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG | 50 |
SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ | 100 |
AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET | 150 |
YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS | 200 |
SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK | 250 |
GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ | 300 |
RKRHWKPSEN MPFAMMDDSS GSFFTEE | 350 |