Locus |
Common name |
Short description |
AT1G23420 |
INO, YAB4 |
INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) |
>AT1G23420.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Taqƒ¿I, TliI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AluI
| AG|CT |
6, 119, 259, 409, 418, 490, 497, 502, 532, 547 |
ApaI
| GGGCC|C |
518 |
AvaII
| G|G[AT]CC |
614 |
BanII
| GPuGCPy|C |
410, 518 |
BlpI
| GC|TNAGC |
501 |
BsaJI
| C|CNNGG |
52 |
BsiHKAI
| G[AT]GC[AT]|C |
410 |
BslI
| CCNNNNN|NNGG |
514 |
Bsp1286I
| G[GAT]GC[CAT]|C |
410, 518 |
BsrDI
| GCAATGNN| |
604 |
BssKI
| |CCNGG |
51, 241 |
BssSI
| C|TCGTG |
365 |
DdeI
| C|TNAG |
394, 463, 500, 655 |
DpnI
| GA-CH3|TC |
44, 445, 557 |
DpnII
| |GATC |
44, 445, 557 |
Fnu4HI
| GC|NGC |
258, 504, 549 |
HaeIII
| GG|CC |
517 |
HindIII
| A|AGCTT |
120, 491 |
HinfI
| G|ANTC |
296, 467 |
HpaII
| C|CGG |
50, 240 |
Hpy188I
| TCN|GA |
339, 464, 555, 640, 656 |
HpyCH4III
| ACN|GT |
110, 138, 313 |
HpyCH4V
| TG|CA |
83, 155, 256, 599 |
MboI
| |GATC |
44, 445, 557 |
MfeI
| C|AATTG |
426 |
MseI
| T|TAA |
455 |
MslI
| CAPyNN|NNPuTG |
233 |
MspI
| C|CGG |
50, 240 |
MwoI
| GCNNNNN|NNGC |
417 |
NciI
| CC|[CG]GG |
51, 241 |
NlaIII
| CATG| |
16, 65, 285, 475, 597, 617 |
NlaIV
| GGN|NCC |
518, 638 |
PflMI
| CCANNNN|NTGG |
514 |
PspOMI
| G|GGCCC |
518 |
RsaI
| GT|AC |
107 |
SacI
| GAGCT|C |
410 |
Sau3AI
| |GATC |
44, 445, 557 |
Sau96I
| G|GNCC |
517, 614 |
ScrFI
| CC|NGG |
51, 241 |
SfcI
| C|TPuPyAG |
263 |
TfiI
| G|A[AT]TC |
296, 467 |
TseI
| G|C[AT]GC |
258, 504, 549 |
Tsp45I
| |GT[CG]AC |
135 |
Tsp509I
| |AATT |
176, 425, 512 |
TspRI
| NNCA[CG]TGNN| |
74 |
XcmI
| CCANNNNN|NNNNTGG |
75, 98 |
Click here to view TAIR data
>AT1G23420.1 length:696
ATGACAAAGC TCCCCAACAT GACGACAACA CTCAACCATC TATTTGATCT | 50 |
GCCGGGGCAG ATTTGCCATG TCCAGTGTGG TTTTTGCACC ACTATTTTGC | 100 |
TGGTGAGTGT ACCGTTTACA AGCTTGTCAA TGGTGGTGAC TGTGAGATGT | 150 |
GGGCATTGCA CAAGCCTTCT CTCTGTCAAT TTGATGAAGG CTTCCTTCAT | 200 |
TCCTCTCCAT CTCCTTGCTT CTCTCTCCCA TCTTGATGAG ACCGGGAAAG | 250 |
AGGAGGTTGC AGCTACAGAT GGTGTGGAAG AAGAAGCATG GAAGGTGAAT | 300 |
CAGGAGAAGG AGAACAGTCC AACGACTTTG GTTTCATCTT CAGACAATGA | 350 |
AGATGAAGAT GTGTCTCGTG TTTACCAAGT TGTCAATAAA CCACCTGAGA | 400 |
AGCGACAAAG AGCTCCTTCA GCTTACAATT GCTTCATCAA GGAAGAGATC | 450 |
AGGAGGTTAA AGGCTCAGAA TCCAAGCATG GCTCACAAGG AAGCTTTCAG | 500 |
CTTAGCTGCC AAAAATTGGG CCCATTTTCC TCCAGCTCAC AACAAGAGAG | 550 |
CTGCTTCAGA TCAATGTTTT TGTGAGGAAG ATAACAATGC GATACTACCA | 600 |
TGCAATGTTT TTGAGGACCA TGAAGAAAGC AATAATGGGT TCCGAGAGAG | 650 |
AAAGGCTCAG AGGCATTCCA TTTGGGGAAA ATCTCCATTT GAGTAA | 700 |
>AT1G23420.1 longest ORF length:231
MTKLPNMTTT LNHLFDLPGQ ICHVQCGFCT TILLVSVPFT SLSMVVTVRC | 50 |
GHCTSLLSVN LMKASFIPLH LLASLSHLDE TGKEEVAATD GVEEEAWKVN | 100 |
QEKENSPTTL VSSSDNEDED VSRVYQVVNK PPEKRQRAPS AYNCFIKEEI | 150 |
RRLKAQNPSM AHKEAFSLAA KNWAHFPPAH NKRAASDQCF CEEDNNAILP | 200 |
CNVFEDHEES NNGFRERKAQ RHSIWGKSPF E | 250 |
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