fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G23420 INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)

>AT1G23420.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Taqƒ¿I, TliI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 6, 119, 259, 409, 418, 490, 497, 502, 532, 547
ApaI GGGCC|C 518
AvaII G|G[AT]CC 614
BanII GPuGCPy|C 410, 518
BlpI GC|TNAGC 501
BsaJI C|CNNGG 52
BsiHKAI G[AT]GC[AT]|C 410
BslI CCNNNNN|NNGG 514
Bsp1286I G[GAT]GC[CAT]|C 410, 518
BsrDI GCAATGNN| 604
BssKI |CCNGG 51, 241
BssSI C|TCGTG 365
DdeI C|TNAG 394, 463, 500, 655
DpnI GA-CH3|TC 44, 445, 557
DpnII |GATC 44, 445, 557
Fnu4HI GC|NGC 258, 504, 549
HaeIII GG|CC 517
HindIII A|AGCTT 120, 491
HinfI G|ANTC 296, 467
HpaII C|CGG 50, 240
Hpy188I TCN|GA 339, 464, 555, 640, 656
HpyCH4III ACN|GT 110, 138, 313
HpyCH4V TG|CA 83, 155, 256, 599
MboI |GATC 44, 445, 557
MfeI C|AATTG 426
MseI T|TAA 455
MslI CAPyNN|NNPuTG 233
MspI C|CGG 50, 240
MwoI GCNNNNN|NNGC 417
NciI CC|[CG]GG 51, 241
NlaIII CATG| 16, 65, 285, 475, 597, 617
NlaIV GGN|NCC 518, 638
PflMI CCANNNN|NTGG 514
PspOMI G|GGCCC 518
RsaI GT|AC 107
SacI GAGCT|C 410
Sau3AI |GATC 44, 445, 557
Sau96I G|GNCC 517, 614
ScrFI CC|NGG 51, 241
SfcI C|TPuPyAG 263
TfiI G|A[AT]TC 296, 467
TseI G|C[AT]GC 258, 504, 549
Tsp45I |GT[CG]AC 135
Tsp509I |AATT 176, 425, 512
TspRI NNCA[CG]TGNN| 74
XcmI CCANNNNN|NNNNTGG 75, 98


Click here to view TAIR data

>AT1G23420.1 length:696
ATGACAAAGC TCCCCAACAT GACGACAACA CTCAACCATC TATTTGATCT 
50
GCCGGGGCAG ATTTGCCATG TCCAGTGTGG TTTTTGCACC ACTATTTTGC 
100
TGGTGAGTGT ACCGTTTACA AGCTTGTCAA TGGTGGTGAC TGTGAGATGT 
150
GGGCATTGCA CAAGCCTTCT CTCTGTCAAT TTGATGAAGG CTTCCTTCAT 
200
TCCTCTCCAT CTCCTTGCTT CTCTCTCCCA TCTTGATGAG ACCGGGAAAG 
250
AGGAGGTTGC AGCTACAGAT GGTGTGGAAG AAGAAGCATG GAAGGTGAAT 
300
CAGGAGAAGG AGAACAGTCC AACGACTTTG GTTTCATCTT CAGACAATGA 
350
AGATGAAGAT GTGTCTCGTG TTTACCAAGT TGTCAATAAA CCACCTGAGA 
400
AGCGACAAAG AGCTCCTTCA GCTTACAATT GCTTCATCAA GGAAGAGATC 
450
AGGAGGTTAA AGGCTCAGAA TCCAAGCATG GCTCACAAGG AAGCTTTCAG 
500
CTTAGCTGCC AAAAATTGGG CCCATTTTCC TCCAGCTCAC AACAAGAGAG 
550
CTGCTTCAGA TCAATGTTTT TGTGAGGAAG ATAACAATGC GATACTACCA 
600
TGCAATGTTT TTGAGGACCA TGAAGAAAGC AATAATGGGT TCCGAGAGAG 
650
AAAGGCTCAG AGGCATTCCA TTTGGGGAAA ATCTCCATTT GAGTAA
700

>AT1G23420.1 longest ORF length:231
MTKLPNMTTT LNHLFDLPGQ ICHVQCGFCT TILLVSVPFT SLSMVVTVRC 
50
GHCTSLLSVN LMKASFIPLH LLASLSHLDE TGKEEVAATD GVEEEAWKVN 
100
QEKENSPTTL VSSSDNEDED VSRVYQVVNK PPEKRQRAPS AYNCFIKEEI 
150
RRLKAQNPSM AHKEAFSLAA KNWAHFPPAH NKRAASDQCF CEEDNNAILP 
200
CNVFEDHEES NNGFRERKAQ RHSIWGKSPF E
250