fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G23420 (INO, YAB4)

Alias INO, YAB4
TF Classification
FioreDBYABBY (Click to show phylogenetic tree)
RARTFC2C2(Zn) / YABBY
AtTFDBC2C2-YABBY
PlnTFDBC2C2-YABBY (v3.0), C2C2-YABBY (v1.0)
DATFC2C2-YABBY
TAIR short description INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
TAIR annotation Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. (.1)
Gene model
Gene model cDNA support
AT1G23420.1 23
Entry clone (w/o stop) IE_02H12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48481: developmental processes ->plant ovule development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 7275: developmental processes ->multicellular organism development
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 4 5
rice
sorghum
physcomitrella
Total 2 5 7
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         abnormal petal (direct input), 
         anther indehiscent (direct input), 
         abnormal shaped leaf (07432, direct input), 
         abnormal flower (07432, direct input), 
         abnormal sepal (07432, direct input), 
         dwarf (direct input), 
         sterile or low fertility (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         late flowering, 
         slow growth, 
         sterile or low fertility, 
         too few branching, 
         abnormal leaf, 
         tall height 
         (A20832-22)
         

         dwarf, 
         abnormal shaped leaf, 
         short internode, 
         abnormal sepal, 
         abnormal petal, 
         abnormal stamen, 
         sterile or low fertility 
         (A21134-127)
         

         dwarf, 
         abnormal shaped leaf, 
         short internode, 
         abnormal sepal, 
         abnormal petal, 
         abnormal stamen, 
         sterile or low fertility 
         (A21135-171)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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