fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G26310 CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1)

>AT1G26310.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HpaII, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, MwoI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 583
AciI C|CGC 574, 759
AflII C|TTAAG 298, 412
AluI AG|CT 91, 234, 312, 396, 567
BfaI C|TAG 197
BglII A|GATCT 101
BsaJI C|CNNGG 122, 747
BslI CCNNNNN|NNGG 386, 473, 662
BspHI T|CATGA 443
BsrI ACTGGN| 76, 275
BstYI Pu|GATCPy 101, 375, 717
Bsu36I CC|TNAGG 541
Cac8I GCN|NGC 293, 503
DdeI C|TNAG 94, 540
DpnI GA-CH3|TC 40, 100, 374, 631, 716
DpnII |GATC 40, 100, 374, 631, 716
DrdI GACNNNN|NNGTC 276
Fnu4HI GC|NGC 392, 566, 577, 759
HaeIII GG|CC 301
HincII GTPy|PuAC 583
HinfI G|ANTC 177, 249, 450, 722
Hpy188I TCN|GA 174, 641, 719
Hpy99I CG[AT]CG| 581
HpyCH4IV A|CGT 255
HpyCH4V TG|CA 182, 241, 262
MboI |GATC 40, 100, 374, 631, 716
MseI T|TAA 258, 297, 411
MslI CAPyNN|NNPuTG 260
MspA1I C[AC]G|C[GT]G 235, 568
N.BstNBI GAGTCNNNN|N 455
NlaIII CATG| 184, 442, 502, 628
NlaIV GGN|NCC 357
NspI PuCATG|Py 503
PflMI CCANNNN|NTGG 386
PvuII CAG|CTG 235, 568
RsaI GT|AC 166, 194, 590, 673
SalI G|TCGAC 583
Sau3AI |GATC 40, 100, 374, 631, 716
ScaI AGT|ACT 167
SmlI C|TPyPuAG 298, 370, 400, 412
SphI GCATG|C 503
StyI C|C[AT][AT]GG 747
Taqƒ¿I T|CGA 62, 162, 582
TfiI G|A[AT]TC 177
TseI G|C[AT]GC 392, 566, 577
Tsp45I |GT[CG]AC 54
Tsp509I |AATT 18, 156, 740


Click here to view TAIR data

>AT1G26310.1 length:768
ATGGGAAGGG GTAGGGTTGA ATTGAAGAGG ATAGAGAACA AGATCAATAG 
50
ACAAGTGACA TTCTCGAAAA GAAGAACTGG TCTTTTGAAG AAAGCTCAGG 
100
AGATCTCTGT TCTTTGTGAT GCCGAGGTTT CCCTTATTGT CTTCTCCCAT 
150
AAGGGCAAAT TGTTCGAGTA CTCCTCTGAA TCTTGCATGG AGAAGGTACT 
200
AGAACGCTAC GAGAGGTATT CTTACGCCGA GAGACAGCTG ATTGCACCTG 
250
ACTCTCACGT TAATGCACAG ACGAACTGGT CAATGGAGTA TAGCAGGCTT 
300
AAGGCCAAGA TTGAGCTTTT GGAGAGAAAC CAAAGGCATT ATCTGGGAGA 
350
AGAGTTGGAA CCAATGAGCC TCAAGGATCT CCAAAATCTG GAGCAGCAGC 
400
TTGAGACTGC TCTTAAGCAC ATTCGCTCCA GAAAAAATCA ACTCATGAAT 
450
GAGTCCCTCA ACCACCTCCA AAGAAAGGAG AAGGAGATAC AGGAGGAAAA 
500
CAGCATGCTT ACCAAACAGA TAAAGGAGAG GGAAAACATC CTAAGGACAA 
550
AACAAACCCA ATGTGAGCAG CTGAACCGCA GCGTCGACGA TGTACCACAG 
600
CCACAACCAT TTCAACACCC CCATCTTTAC ATGATCGCTC ATCAGACTTC 
650
TCCTTTCCTA AATATGGGTG GTTTGTACCA AGAAGAAGAC CAAACGGCGA 
700
TGAGGAGGAA CAATCTGGAT CTGACTCTTG AACCCATTTA CAATTACCTT 
750
GGCTGTTACG CCGCTTGA
800

>AT1G26310.1 longest ORF length:255
MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH 
50
KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL 
100
KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN 
150
ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ 
200
PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL 
250
GCYAA
300