fioreDB : Database for Crop and Flower Bio-engineering by CRES-T system

fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G26310 (CAL1, AGL10, CAL)

Alias

CAL1, AGL10, CAL

TF Classification

FioreDB	MADS (Click to show phylogenetic tree)
RARTF	MADS / CAULIFLOWER
AtTFDB	MADS / TypeII
PlnTFDB	MADS (v3.0), MADS (v1.0)
DATF	MADS

TAIR short description

CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1)

TAIR annotation

Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. (.1)

Gene model

Gene model	cDNA support
AT1G26310.1	7

Entry clone (w/o stop)

RE_02D11_x

External link

General info	TAIR DATA
Genomic seq	TAIR seq viewer
SNP	SALK SNP Viewer
T-DNA tag line	T-DNA Express
miRNA	Search ASRP
Phylogeny	SALAD database
Promoter	ppdb

Microarray data
FioreDB
ATTED-II	ATTED-II data
NCBI GEO	NCBI GEO profile
NASC	NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator	Genevestigator
eFP Browser	Developmental Map Abiotic Stress
AtGenExpress	Development Hormone Abiotic Stress Light Pathogen

Gene Ontology (GO)

(P) 10582: developmental processes	->floral meristem determinacy
(P) 30154: other cellular processes	->cell differentiation
(F) 3677: DNA or RNA binding	->DNA binding
(F) 3700: transcription factor activity	->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes	->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding	->protein dimerization activity
(F) 5515: protein binding	->protein binding
(C) 5634: nucleus	->nucleus
(P) 6351: transcription,DNA-dependent	->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent	->regulation of transcription, DNA-templated
(F) 977: nucleic acid binding	->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9911: developmental processes	->positive regulation of flower development

miRNA/tasiRNA

Orthologs

	Type
	Ia	Ib	II	III	Total
poplar			1	3	4
soybean			2	7	9
rice			1		1
sorghum			1	2	3
physcomitrella
Total			5	12	17

Repression motif

AMRRNNLDLTLEPIYN at 237/255 in AT1G26310.1

Repression motif
in putative orthologs

EVGRNELDLTLEPLYS at 220/236 in soybean Gm044291 (Type II)
ARRNYELDLTLEPIYS at 223/241 in poplar Pt042631 (Type II)
ELGRNGLDLTLEPLYS at 227/243 in soybean Gm000791 (Type III)
ELGRNGLDLTLEPLYS at 227/243 in soybean Gm003795 (Type III)
EVGRHELDLTLEPLYS at 209/225 in soybean Gm022643 (Type III)

Status

Plasmid construction	-> done
Plasmid construction	-> done
Transformed	-> done
T1 seed harvested	-> done
T2 seed harvested	-> done

CRES-T phenotype from individual project
View all photo

abnormal flower (A20914, A20912), too few branching (A20912), early flowering (direct input, A20912, A20914), sterile or low fertility (A20914, A20912)