fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G27360 SPL11 squamosa promoter-like 11 (.1.2.3.4)

>AT1G27360.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 1113
BglII A|GATCT 369, 835
EcoRV GAT|ATC 1075
HindIII A|AGCTT 265, 900
HpaI GTT|AAC 459
NdeI CA|TATG 1160
PvuII CAG|CTG 359, 943
SalI G|TCGAC 222
XhoI C|TCGAG 340


Click here to view TAIR data

>AT1G27360.1 length:1182
ATGGACTGCA ACATGGTATC TTCGTCCCAG TGGGATTGGG AGCATTTGAT 
50
CATGTCCAAT CCGTCAAGGA CTGAAGATGA CAGCAAACAG CTACCTACTG 
100
AGTGGGAAAT TGAAAAAGGT GAAGGAATTG AATCTATAGT TCCACATTTC 
150
TCAGGCCTTG AGAGAGTCAG TAGTGGCTCT GCCACCAGCT TCTGGCACAC 
200
TGCTGTATCG AAAAGCTCAC AGTCGACCTC TATCAACTCA TCATCTCCCG 
250
AAGCCAAACG ATGCAAGCTT GCATCAGAAA GTTCCCCTGG AGATTCTTGC 
300
AGCAACATAG ACTTTGTCCA GGTGAAGGCT CCCACAGCTC TCGAGGTATC 
350
CGTTGCCTCA GCTGAATCAG ATCTTTGTTT AAAACTAGGA AAGCGGACAT 
400
ACTCTGAAGA ATACTGGGGT AGAAACAATA ATGAAATTTC AGCGGTTTCT 
450
ATGAAGTTGT TAACTCCATC TGTTGTCGCT GGGAAATCCA AATTGTGTGG 
500
TCAGAGCATG CCAGTCCCGC GTTGCCAAAT TGATGGCTGT GAACTGGATC 
550
TCTCATCTGC TAAGGGTTAT CATCGTAAGC ACAAAGTCTG CGAAAAGCAT 
600
TCAAAGTGCC CAAAAGTTAG CGTGAGTGGC CTGGAACGTC GGTTCTGCCA 
650
ACAGTGTAGC AGGTTCCATG CTGTCTCTGA ATTTGATGAG AAGAAACGAA 
700
GCTGCCGAAA ACGTCTTTCT CATCATAATG CGAGGCGTCG TAAGCCACAA 
750
GGAGTATTTT CAATGAATCC CGAGAGGGTG TATGATCGAA GACAGCATAC 
800
AAATATGTTG TGGAATGGGG TGTCCCTTAA CGCGAGATCT GAAGAAATGT 
850
ATGAATGGGG TAATAACACT TATGATACAA AGCCTAGACA AACGGAAAAA 
900
AGCTTTACTC TGAGCTTCCA GAGAGGTAAT GGCTCTGAGG ACCAGCTGGT 
950
TGCTAGTAGC AGCCGTATGT TCTCTACATC TCAAACCTCA GGTGGGTTCC 
1000
CAGCAGGAAA GTCCAAGTTT CAACTTCATG GCGAAGATGT GGGAGAATAC 
1050
TCAGGAGTCC TCCATGAATC TCAAGATATC CACCGTGCTC TCTCTCTTCT 
1100
GTCAACCTCT TCGGATCCCC TGGCCCAACC ACATGTGCAG CCATTTTCTC 
1150
TACTCTGTTC ATATGATGTT GTACCAAAAT AG
1200

>AT1G27360.1 longest ORF length:393
MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF 
50
SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC 
100
SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS 
150
MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH 
200
SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ 
250
GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK 
300
SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY 
350
SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
400