fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G44830 Integrase-type DNA-binding superfamily protein (.1)

>AT1G44830.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AgeI, AhdI, AlwI, ApaI, AscI, AvrII, BaeI, BalI, BbsI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BssHII, BssSI, BstXI, BstZ17I, BtrI, Cfr10I, DraIII, EaeI, EagI, EarI, EciI, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PvuI, RsrII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SwaI, Tth111I, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 1214
AccI GT|[AC][TG]AC 2454
AccII(FnuDII) CG|CG 2941, 3179, 4204, 4558
AciI C|CGC 2370, 2978, 4203, 4557
AclI AA|CGTT 3261
AfeI AGC|GCT 204
AflII C|TTAAG 200, 1657
AflIII A|CPuPyGT 1586, 2059, 2942, 3148, 4328
AluI AG|CT 3, 969, 1050, 1182, 1351, 1958, 1962, 1976, 2009, 2065, 2080, 2345, 3169, 3216, 3250, 3465, 3665, 4150, 4252, 4357, 4363, 4862, 5150
AlwNI CAGNNN|CTG 4367
Aor51HI(Eco47III) AGC|GCT 204
ApaLI G|TGCAC 976, 2552
ApoI Pu|AATTPy 16, 53, 280, 446, 484, 507, 668, 713, 1432, 1457, 1525, 1675, 2577, 2639, 3104, 3141, 4944, 5014, 6032, 6074, 6097, 6135, 6174
AseI AT|TAAT 242, 257, 274, 334, 397, 674, 706, 734, 1325, 2666, 2724, 3111, 3546, 3840, 4546, 5252, 5678, 5992, 6043
AvaI C|PyCGPuG 907
AvaII G|G[AT]CC 301, 377, 950, 1003, 5566
BamHI G|GATCC 115, 4246
BanI G|GPyPuCC 1824
BanII GPuGCPy|C 2081, 4151
BbvCI CC|TCAGC 4251
BclI T|GATCA 4530
BfaI C|TAG 604, 874, 920, 971, 1314, 1518, 1960, 2084, 2899, 2958, 3171, 3470, 4209, 4827
BglII A|GATCT 4277, 4440
BsaAI PyAC|GTPu 2060, 2585, 3147, 5407
BsaHI GPu|CGPyC 1214
BsaJI C|CNNGG 1371, 3233, 3676, 4205
BsaWI [AT]|CCGG[AT] 287
BsiHKAI G[AT]GC[AT]|C 106, 976, 2081, 2552, 3211, 4151
BsiWI C|GTACG 1646, 5405
BslI CCNNNNN|NNGG 1929
BsmI GAATGCN| 5008
BsoBI C|PyCGPuG 907
Bsp1286I G[GAT]GC[CAT]|C 106, 976, 2081, 2552, 3211, 3856, 4151
BspDI AT|CGAT 326, 682
BspHI T|CATGA 5225
BspT107I(HgiCI) G|G[TC][AG]CC 1824
BsrGI T|GTACA 215, 5061
BsrI ACTGGN| 5367
BssKI |CCNGG 1389, 1827
BstAPI GCANNNN|NTGC 4368
BstBI TT|CGAA 4882
BstEII G|GTNACC 5976
BstF5I GGATGNN| 4092
BstNI CC|[AT]GG 1389, 1827
BstUI CG|CG 2941, 3179, 4204, 4558
BstYI Pu|GATCPy 115, 4172, 4246, 4277, 4383, 4440, 4761
Bsu36I CC|TNAGG 947, 1925
BtgI C|CPuPyGG 4205
BtsI GCAGTGNN| 1338
Cac8I GCN|NGC 1961, 2786
ClaI AT|CGAT 326, 682
DdeI C|TNAG 6, 62, 75, 86, 110, 169, 946, 1239, 1924, 3463, 3600, 4250, 4336, 5432, 5597, 5786
DpnI GA-CH3|TC 114, 1194, 1995, 2000, 3738, 4144, 4171, 4245, 4276, 4382, 4439, 4529, 4760
DpnII |GATC 114, 1194, 1995, 2000, 3738, 4144, 4171, 4245, 4276, 4382, 4439, 4529, 4760
DraI TTT|AAA 355, 633, 1167, 3187, 3826, 6053, 6077, 6143, 6166
DrdI GACNNNN|NNGTC 4480
EcoNI CCTNN|NNNAGG 1929
EcoO109I PuG|GNCCPy 951, 5567
EcoRI G|AATTC 1457, 2577
EcoRV GAT|ATC 1131, 2215, 4609, 5437
Fnu4HI GC|NGC 4203, 4224, 4356, 4362, 4368
HaeII PuGCGC|Py 204, 902
HaeIII GG|CC 829, 923, 3286
HhaI GCG|C 203, 901, 4559
HinP1I G|CGC 203, 901, 4559
HincII GTPy|PuAC 3176, 5400
HindIII A|AGCTT 1183, 2010, 2346
HinfI G|ANTC 157, 586, 615, 861, 1106, 1266, 1301, 1397, 1562, 1891, 1905, 2644, 2814, 2889, 3097, 3269, 3493, 3596, 3724, 4494, 4552, 4633, 4923, 5574, 5836
HpaI GTT|AAC 3176, 5400
HpaII C|CGG 286
Hpy188I TCN|GA 49, 292, 1197, 1983, 1998, 2070, 3100, 3272, 3599, 4140, 4147, 4434, 4491, 4584, 4612, 4947, 4990, 5478, 5598, 5742, 5839
Hpy99I CG[AT]CG| 1124, 4220
HpyCH4III ACN|GT 223, 526, 544, 752, 1408, 1821, 2052, 2074, 2704, 3002, 4466, 5043, 5109, 5416, 5494
HpyCH4IV A|CGT 1213, 1647, 2059, 2584, 2691, 2904, 3146, 3260, 5402, 5406, 5422
HpyCH4V TG|CA 404, 975, 1091, 1333, 1589, 1866, 1878, 1885, 2551, 2715, 2787, 3005, 3081, 3224, 3357, 3374, 3698, 4360, 5008, 5195, 5343
MboI |GATC 114, 1194, 1995, 2000, 3738, 4144, 4171, 4245, 4276, 4382, 4439, 4529, 4760
MluI A|CGCGT 2942
MseI T|TAA 0, 26, 55, 199, 241, 256, 273, 333, 354, 396, 480, 509, 572, 632, 673, 689, 705, 733, 1057, 1166, 1324, 1656, 1693, 1707, 1752, 1965, 2194, 2365, 2570, 2615, 2665, 2723, 2947, 2952, 2994, 3069, 3106, 3110, 3175, 3186, 3198, 3257, 3264, 3292, 3404, 3421, 3445, 3545, 3772, 3799, 3825, 3839, 3982, 4239, 4545, 4810, 4840, 4896, 4940, 4961, 5031, 5131, 5160, 5251, 5261, 5399, 5677, 5750, 5766, 5831, 5991, 5998, 6042, 6052, 6058, 6076, 6142, 6165, 6188
MslI CAPyNN|NNPuTG 1587, 2139, 2433, 3361, 4090, 4233, 4503
MspA1I C[AC]G|C[GT]G 4205, 4358, 4364
MspI C|CGG 286
MwoI GCNNNNN|NNGC 4203, 4221, 4362
N.BstNBI GAGTCNNNN|N 162, 2894, 4557
NdeI CA|TATG 1229, 1259, 3557, 3759
NheI G|CTAGC 1961
NlaIII CATG| 211, 559, 857, 999, 1585, 1876, 1887, 2408, 3241, 3355, 3359, 3456, 3860, 4131, 4327, 4459, 4503, 4537, 4806, 5063, 5181, 5224, 5517, 5570
NlaIV GGN|NCC 115, 290, 301, 378, 951, 1004, 1367, 1824, 3672, 4246, 5566, 5929
NsiI ATGCA|T 1092, 1879, 1886, 3358, 3699
NspI PuCATG|Py 1586, 1877, 3360, 3457, 4328
PacI TTAAT|TAA 3110
PaeR7I C|TCGAG 907
PciI A|CATGT 1586, 4328
PpuMI PuG|G[AT]CCPy 951, 5567
PsiI TTA|TAA 391, 2441, 2599, 3511, 3521, 3790, 6093
PspGI |CC[AT]GG 1389, 1827
PstI CTGCA|G 1334, 4361
PvuII CAG|CTG 4358, 4364
RsaI GT|AC 214, 910, 1025, 1645, 1797, 1818, 1873, 2862, 2932, 3057, 3440, 3562, 3641, 4099, 4507, 4767, 4917, 5060, 5106, 5404, 5420
SacI GAGCT|C 2081, 4151
SacII CCGC|GG 4205
Sau3AI |GATC 114, 1194, 1995, 2000, 3738, 4144, 4171, 4245, 4276, 4382, 4439, 4529, 4760
Sau96I G|GNCC 301, 377, 829, 950, 1003, 5566
ScaI AGT|ACT 2933, 3563, 5107
ScrFI CC|NGG 1389, 1827
SfcI C|TPuPyAG 222, 1334, 4361
SmlI C|TPyPuAG 200, 907, 1657, 2007, 3607, 4678
SspI AAT|ATT 387, 469, 1017, 1043, 1322, 1757, 1775, 2152, 2279, 2361, 2721, 3063, 3073, 3549, 5293, 5995
StuI AGG|CCT 924, 3287
StyI C|C[AT][AT]GG 1371, 3233, 3676
Taqƒ¿I T|CGA 159, 248, 325, 681, 840, 906, 2077, 3397, 4881
TfiI G|A[AT]TC 586, 615, 1106, 1266, 1397, 1562, 1891, 1905, 2644, 2814, 3097, 3269, 3493, 3596, 3724, 4494, 4633, 4923, 5574
TliI C|TCGAG 907
TseI G|C[AT]GC 4224, 4356, 4362, 4368
Tsp45I |GT[CG]AC 173, 854, 1573, 2130, 2582, 3151, 4463, 5363
Tsp509I |AATT 15, 39, 52, 57, 146, 192, 239, 254, 271, 279, 331, 346, 394, 401, 418, 445, 483, 506, 511, 581, 645, 667, 675, 687, 703, 712, 735, 1055, 1141, 1360, 1401, 1431, 1456, 1524, 1674, 1723, 1967, 2188, 2332, 2444, 2542, 2576, 2638, 2663, 2667, 2699, 2804, 2949, 2954, 3103, 3108, 3112, 3140, 3275, 3314, 3394, 3407, 3661, 3797, 3984, 4732, 4780, 4792, 4943, 5013, 5263, 5374, 5448, 5764, 5823, 5947, 5989, 6008, 6019, 6031, 6044, 6056, 6073, 6084, 6096, 6134, 6162, 6173, 6191, 6213
TspRI NNCA[CG]TGNN| 307, 1338, 3005, 5044
XbaI T|CTAGA 605, 2085
XhoI C|TCGAG 907


Click here to view TAIR data

>AT1G44830 genomic sequence (4000-4635,) length:6219
tttaagctaa gaagtgaatt ttagttttta atctgttttg aattattttt 
50
cagaatttaa ttctaagata ttagcctaag atacacctaa gatataccat 
100
tggaggtgct ctaaggatcc aaaaaagaaa gattacccta aaactctaat 
150
tattgttgag tcgaggctac ttagtgacat aggtaaacaa atcaatttcc 
200
ttaagcgctt ttcatgtaca actacagtat aacctctata aattaatact 
250
cgataaatta ataatctcta taaattaata aattcttccg gttccgagtt 
300
gggaccagtg taaaaagtaa cacaaatcga taaattaata agataataat 
350
tttttttaaa gtcttatgta aatatatggt cccatcaata ttataaatta 
400
ataattgcat aaatatatca attatatata tacattatat gtaagaaatt 
450
tctttgaaac atatttctaa tattgttttg cttaaatttg tatttattct 
500
tatttgaaat ttaattctaa tatgttactg tatcaaaaac ttttactgtt 
550
gttttctata catgatatta tttttaactt gtaattgatt ctacaaagat 
600
attttctaga aaaaagaatc ttatagaaat gttttaaaag ttactaaatt 
650
aggaaagtct ctctataaaa tttattaatt tatcgataaa ttaaaacctc 
700
tctaaattaa taaaatttta caatcccaac attattaatt tatagaggtt 
750
ttactgtata tttctaaaaa tcaaggtata tattaccatc acccttacca 
800
atcaagcaca atgtccttgt tgcgtatcag ggccgtcatt ttcgatggtg 
850
ggaggtcaca tgactccaca ctcatctagg ttcaactttg ataccattta 
900
tagcgcctcg agtaccatta tctaggcctt catatccact ctcaacctaa 
950
ggaccctaac atcaagtgat agctagtgca cacctatcat ttctataact 
1000
catggacccc aaaagcaata ttttttgtac ctcgtcctaa aaaatattta 
1050
gagctaaatt aagcgtgttt gaactaaaat cattgttttc aatgcattga 
1100
aaaaaggatt caaagatgaa cgcacgacga gatatcccaa caaattacag 
1150
atgtggaaat gggctattta aacattagga caaagctttt gccaagatcg 
1200
gacatcattt gaagacgtca atgatgtcca tatgttgttc taagataggc 
1250
ttcttgacca tatgttgatt cacaaacgca ctcaaataga tttagacgat 
1300
tgactctata tctaactagg caatattaat ctcctgcagt gaactttgat 
1350
gtagctccta caatttggag ccaaggtggg aaaaacgaac caggcttgaa 
1400
tcaattttac agtatcaaag aaaaaatatg taaattttgg agtattgtct 
1450
cctactgaat tcactcaaca accacaacta aaatcttgaa atctctattg 
1500
tcataaatct tttctgcttc taggaaattt ctcaatctaa tgaaatcaaa 
1550
aacaaaggat ttgattctgt tctgtcacaa tccacacatg tgcatttgcc 
1600
tctacaccat ccaacacact cttcaatcct aatgagaaac ttctccgtac 
1650
gttcctctta agtttccacc acacgaattt atttccactc tggcttaact 
1700
cgttaccatt aaatgtttct ttctaattta tttcttgtaa ccacaaaact 
1750
ttgttaaata tttcttgtaa gaaaaatatt gattgattga taagaaaggt 
1800
acggaaggtc atatattgag tacggtgcca ggtaagattg tccaaactac 
1850
gaataggata tttttagtgc aaaagtacat gcattatgca tgaatcttca 
1900
tttatgattc tatttgtcta tttcctcagg tagggttcgc tcactattct 
1950
tcgttaggta gctagcttaa ttgctttagc ttctcggatt ttacccgatc 
2000
cgatcactca agctttatga cacaatgtaa ctcatcttct tcttgttctt 
2050
acacagttac acgtatagct tcagactgtc gagctctaga cactaaaaca 
2100
atcaacaaag aatgtgattg ggtgaatatg gtgacattgt ggtgaaaaga 
2150
aaatatttat tggtaaataa aaataaatgt aaaatagtga attagttaaa 
2200
tggtatgaaa tggagatatc tttcggtgaa tgagaatgtt atagttgttt 
2250
ttagaaaata gcaaagtcat attggtaaaa tattgagaga aaatgtaaaa 
2300
tgtttttttt ccgtaaatga ctttgaaaag tataatttat ttgataagct 
2350
tggatataca aatattttaa cccgctaaat aatatagata tatccaaaaa 
2400
catagataac atgattatat gacaaaaaca taaatatgtt ttataaatta 
2450
gatgtctaca taacgaaaat aatgtagtag aggaaatgtg ttctacaagt 
2500
tgtagatata agagccaaaa catataaaaa cttcattttg ataaattaga 
2550
tgtgcacata gaatactaat gttaaagaat tcgtcacgta agatttagtt 
2600
ataactatta tttttcttaa aagaaagtaa aatagtcaaa atttgaatca 
2650
ttctctttag atggaattaa tttgattatt tattcaaata ccacgtttgt 
2700
aattacagtc attgagtgca aatattaata taaaaatggt agaacattgt 
2750
tggttttgtt ttatcataaa cttttgtaaa atgttgcctg cattttccaa 
2800
cgaacaattc tgttgattcg tttcttgata tgaataaaaa accttcatta 
2850
ttgttatatt atagtacccc aaaagagaaa aaagaaatag agtcgtctgg 
2900
ctagaacgtg aacacgaata gattagttta gtagtactct tacgcgtctt 
2950
aatttaattc tagtgccgac taaatataac cgcagattag tttagttaat 
3000
aaacagtgca agactattat gaggtttgac gattttactt tagtttattt 
3050
agttagtagt acaatattat ttaatattac aatgcagttt gacaaaagaa 
3100
tctgaattta attaatttag taaaagcctt tttacagaga gaattttacg 
3150
tgtgacaagg agacacaaag agctagttaa cgcggtttta aaagtcccat 
3200
taagacagaa gagcaccagc tcttgtgcat taccttggta aacatgactt 
3250
cagctacttt aacgtttaag attctgaatt atgtttaggc cttttaacca 
3300
aaaaaaaaaa cttgtaattt ttgtattata tatatatata tatatatatc 
3350
tataatcatg catgtgattt cattttgcat ctcatttatc aaaataattc 
3400
gatagttaaa ttattcttat gattaacttt gtcttttgtt tgtaccttaa 
3450
aaaatcacat gctcttagct cctagaagtt gcctctaaaa atagaatcca 
3500
atgtttcctc ttataatgtt ttataacttt ctgtcgtatc ttgatattaa 
3550
tattctcata tgagtactga tttttgttat ttacattttt attcaagatt 
3600
ctgaggctca agaagtagta acttttagtt gtaaacaata gtgtactttt 
3650
gtggaactaa agaattagct tggagccttg gaggtcaaat caataaatat 
3700
gcatttttga aaataaaaaa tagggattct cttattagtg atctgtgatt 
3750
gggtgtagca tatgggattg tgattaagga aaatcttttt tataaataaa 
3800
ttaaaaacac ctgtctctta cattatttaa aagaaaagta ttaatctctt 
3850
tgtgtgtgcc ccatgctact ttctttgact atgttcatag tatttttttt 
3900
tcttttgagt tctttatgtt tctctttcca tttttgttct ctataaatag 
3950
aaacacacca ttcttctcct ccaacttcct cccttaatta gtatcaaaaA 
4000
TGGTGAAAAC ACTTCAAAAG ACACCAAAGA GAATGTCATC TCCATCATCA 
4050
TCATCTTCAT CATCCTCATC AACATCATCA TCATCCATAA GGATGAAGAA 
4100
GTACAAGGGA GTGAGAATGA GAAGTTGGGG TTCATGGGTT TCAGAGATCA 
4150
GAGCTCCTAA TCAAAAGACA AGGATCTGGC TTGGTTCTTA CTCAACTGCT 
4200
GAAGCCGCGG CTAGAGCCTA CGACGCAGCA CTCCTATGTC TTAAAGGATC 
4250
CTCAGCTAAT AATCTCAACT TCCCAGAGAT CTCAACTTCT CTCTACCATA 
4300
TTATCAACAA TGGTGATAAC AACAATGACA TGTCCCCTAA GTCTATACAA 
4350
AGAGTAGCAG CTGCAGCTGC TGCTGCCAAC ACAGATCCTT CCTCATCATC 
4400
AGTCTCTACT TCATCTCCAT TGCTTTCCTC TCCATCTGAA GATCTCTATG 
4450
ATGTTGTCTC CATGTCACAG TATGACCAAC AAGTCTCCTT GTCTGAATCA 
4500
TCATCATGGT ACAACTGCTT TGATGGTGAT GATCAGTTCA TGTTCATTAA 
4550
TGGAGTCTCC GCGCCGTATT TGACAACATC ACTTTCTGAT GATTTCTTTG 
4600
AGGAAGGAGA TATCAGATTA TGGAACTTCT GCTGAttcta ctttcattat 
4650
accttattct ttgtttcaat atatatactt gagttatgta acttatacaa 
4700
tgtgttatac atttttttct tcccttttct atcaattctc acaatgtatg 
4750
gaacatttgg ggatctttgt accaatatct aaattatttt tgaaattaga 
4800
tatttttcat gttaagagtt cactaaatct agtagtagtg gttaagtatg 
4850
gaaatagatt tatagctttt gaacaaagaa cttcgaatga taacaagtta 
4900
aaaggtaaaa acgaaaaagt acagaatcat attgttgttg attaaattct 
4950
gaaacctaaa agttaagagt tagtgttgaa aacaatcatt tcagatttta 
5000
tagtatgaat gcaaaatttg gcgttactga ctttaacact aacactgttt 
5050
gatgtaaatg tgtacatgat acaaaataag tggtggtaag atgactatgc 
5100
gatataagta ctgtatatat gatttttctt tattaaggat ataaaagtat 
5150
tagctaatga gttaaacaga aagcagattt ttcatgtgaa aagttttgca 
5200
aagtcaaaga gtaagaagca agtttcatga ggcttgtcat agaaggcgat 
5250
gattaatcct acttaattat tgttgaatag agtaagtgta taaatattat 
5300
ttatttagaa gaaagataag gaaaaagaga gaagagacaa gagatgcaga 
5350
atggttttgt gtggtgactg gttagaattg gtaaaaccaa agagaaagag 
5400
ttaacgtacg tggaaaactg tgtacgtttg tgcttagata tcgtaaaaaa 
5450
attgacatcc attttactcc aacattggtc tgaagaaaaa tctaacagta 
5500
gatttgagca gaaagccaca tgagttgttt tggtttcttg ttatgtgtgt 
5550
gttctttgtg agatggggtc ccatgattca ctctcttacc cttgctcctc 
5600
agaaactcca tctctatttt tttaggtatg atttgttttt ctttagataa 
5650
gttccccccc ccccccctca aatatacatt aataccattg gtgatacaaa 
5700
accatacaag tttgttatag gtaaaagaag gtataagcaa tatcggaata 
5750
gttaaaggcg gtgaaaatta actttgaaaa taaagactaa gaatgatgct 
5800
tttggtaaaa cttttgtgat tggtaattac ttttaagact ccgattggtg 
5850
ataaacaaaa gaaacgatag gaatatgaat gaaaaataac aaaaagaaac 
5900
aagaaaaaaa gaaaaatggt cataagtagg aaccaagagg aacataggaa 
5950
ttgaacaaaa tgattatggt aaatggtaac cagaaaggtg aattaatatt 
6000
taacataata attactaaaa aattatttat tgaattttgt ttattaattt 
6050
cttttaaaat taaagttttg tataaattta aaataaatta tattataaat 
6100
ttctcttcaa aacatttatt tattttatag taaaaaattc actttaaaac 
6150
atttatttat actaatttaa aataaattca taacattcat taaattgaaa 
6200
gtttgataaa aaacaattt
6250