fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G46480 WOX4 WUSCHEL related homeobox 4 (.1)

>AT1G46480.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstEII, BstF5I, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy99I, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, Tth111I, XbaI, XcmI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 431
AciI C|CGC 430
AflIII A|CPuPyGT 616
AgeI A|CCGGT 199
AluI AG|CT 74, 105, 485, 623, 723
ApoI Pu|AATTPy 211
AvaI C|PyCGPuG 255, 721
AvaII G|G[AT]CC 201
BfaI C|TAG 548
BsaHI GPu|CGPyC 148
BsaJI C|CNNGG 255
BsaWI [AT]|CCGG[AT] 199
BsmI GAATGCN| 324
BsoBI C|PyCGPuG 255, 721
BspHI T|CATGA 9
BsrFI Pu|CCGGPy 199
BsrGI T|GTACA 311
BsrI ACTGGN| 499
BssKI |CCNGG 254
BstBI TT|CGAA 18
BstUI CG|CG 431
Cac8I GCN|NGC 430
Cfr10I [AG]|CCGG[TC] 199
DdeI C|TNAG 66, 72, 103, 471
DpnI GA-CH3|TC 41, 191
DpnII |GATC 41, 191
Fnu4HI GC|NGC 76, 115, 484
HinfI G|ANTC 51, 278
HpaII C|CGG 111, 144, 198, 254
Hpy188I TCN|GA 203, 512
HpyCH4V TG|CA 77, 363
MboI |GATC 41, 191
MfeI C|AATTG 241
MseI T|TAA 171, 507, 693
MspI C|CGG 111, 144, 198, 254
MwoI GCNNNNN|NNGC 76, 475
NciI CC|[CG]GG 254
NlaIII CATG| 8, 47, 615
NlaIV GGN|NCC 272, 413
NspI PuCATG|Py 616
PaeR7I C|TCGAG 721
PciI A|CATGT 616
RsaI GT|AC 310, 327, 376, 604, 675
RsrII CG|G[AT]CCG 202
Sau3AI |GATC 41, 191
Sau96I G|GNCC 201
ScaI AGT|ACT 676
ScrFI CC|NGG 254
SmaI CCC|GGG 255
SmlI C|TPyPuAG 281, 301, 721
Taqƒ¿I T|CGA 17, 53, 387, 720
TliI C|TCGAG 721
TseI G|C[AT]GC 76, 115, 484
Tsp45I |GT[CG]AC 150, 545
Tsp509I |AATT 210, 240
TspRI NNCA[CG]TGNN| 499
XhoI C|TCGAG 721
XmaI C|CCGGG 255


Click here to view TAIR data

>AT1G46480.1 length:756
ATGAAGGTTC ATGAGTTTTC GAATGGGTTT TCTTCATCGT GGGATCAACA 
50
TGACTCGACA TCATCCCTTA GCCTAAGCTG CAAACGCCTC CGTCCTCTCG 
100
CCCCTAAGCT CTCCGGCAGC CCTCCCTCCC CTCCTTCTTC TTCCTCCGGC 
150
GTCACTTCAG CCACTTTTGA CCTTAAAAAC TTCATTAGAC CCGATCAAAC 
200
CGGTCCGACA AAATTTGAAC ACAAACGAGA CCCTCCTCAT CAATTGGAGA 
250
CGCACCCGGG AGGGACAAGG TGGAACCCGA CTCAAGAACA GATAGGGATA 
300
CTTGAGATGT TGTACAAAGG TGGAATGCGT ACTCCTAATG CTCAACAGAT 
350
TGAGCATATC ACATTGCAAC TCGGTAAGTA CGGGAAAATC GAAGGGAAAA 
400
ATGTGTTCTA TTGGTTCCAG AACCACAAAG CCCGCGAGAG ACAGAAGCAG 
450
AAGAGGAACA ACCTCATCAG CCTAAGTTGC CAAAGCAGCT TCACGACCAC 
500
TGGTGTCTTT AATCCGAGTG TAACTATGAA GACAAGAACA TCATCGTCAC 
550
TAGACATTAT GAGAGAACCA ATGGTGGAGA AGGAGGAGTT AGTGGAAGAG 
600
AATGAGTACA AGAGGACATG TAGGAGCTGG GGATTTGAGA ACTTGGAGAT 
650
AGAGAACAGG AGAAACAAAA ATAGTAGTAC TATGGCAACT ACTTTTAATA 
700
AAATCATTGA CAATGTAACC CTCGAGCTTT TTCCTCTCCA TCCTGAAGGG 
750
AGATGA
800

>AT1G46480.1 longest ORF length:251
MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG 
50
VTSATFDLKN FIRPDQTGPT KFEHKRDPPH QLETHPGGTR WNPTQEQIGI 
100
LEMLYKGGMR TPNAQQIEHI TLQLGKYGKI EGKNVFYWFQ NHKARERQKQ 
150
KRNNLISLSC QSSFTTTGVF NPSVTMKTRT SSSLDIMREP MVEKEELVEE 
200
NEYKRTCRSW GFENLEIENR RNKNSSTMAT TFNKIIDNVT LELFPLHPEG 
250
R
300