fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G53230 TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1)

>AT1G53230.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 609
EcoRI G|AATTC 1075
PvuII CAG|CTG 803
SmaI CCC|GGG 1024
SpeI A|CTAGT 777
StyI C|C[AT][AT]GG 334
XbaI T|CTAGA 48


Click here to view TAIR data

>AT1G53230.1 length:1176
ATGGCACCAG ATAACGACCA TTTCTTAGAT TCTCCGTCGC CGCCTCTTCT 
50
AGAGATGAGA CACCACCAAT CAGCGACGGA GAACGGTGGT GGTTGCGGCG 
100
AGATTGTGGA GGTACAAGGA GGTCACATTG TTCGGTCAAC AGGAAGAAAA 
150
GACAGACATA GTAAAGTATG TACAGCGAAA GGACCACGTG ACCGGCGCGT 
200
GAGACTCTCA GCTCCGACGG CGATTCAATT CTACGATGTT CAAGATAGAC 
250
TTGGTTTTGA TCGACCAAGT AAAGCTGTTG ATTGGCTTAT TACTAAAGCT 
300
AAATCCGCCA TTGATGATCT TGCTCAGCTT CCTCCTTGGA ACCCCGCCGA 
350
TACTCTTCGT CAACACGCCG CCGCTGCTGC TAACGCTAAA CCCAGAAAAA 
400
CCAAAACTTT AATTTCTCCG CCACCGCCAC AACCGGAAGA AACAGAGCAT 
450
CATCGAATCG GAGAAGAAGA AGATAACGAA TCGAGTTTTC TTCCGGCGTC 
500
AATGGATTCT GATTCGATAG CTGACACTAT AAAGTCGTTT TTTCCGGTAG 
550
CTTCAACGCA ACAGAGCTAT CATCATCAGC CACCGTCACG AGGCAATACA 
600
CAGAACCAAG ATCTTCTTCG TCTCTCGCTT CAATCTTTCC AAAATGGTCC 
650
ACCTTTTCCT AATCAAACAG AACCTGCTCT GTTCTCCGGC CAGAGCAATA 
700
ATCAGTTAGC GTTTGACTCA TCGACGGCAA GCTGGGAACA GAGTCATCAG 
750
TCACCGGAAT TTGGAAAGAT ACAGAGACTA GTGTCATGGA ACAACGTCGG 
800
AGCAGCTGAA TCCGCCGGAA GTACCGGAGG ATTTGTGTTT GCTTCTCCGT 
850
CGTCGTTGCA TCCAGTTTAT AGCCAAAGTC AGCTTTTATC ACAGAGGGGT 
900
CCCCTTCAGT CCATTAACAC ACCTATGATT CGTGCTTGGT TTGATCCTCA 
950
CCATCATCAT CATCATCATC AGCAGTCCAT GACCACTGAC GATCTCCACC 
1000
ATCATCATCC CTACCATATC CCTCCCGGGA TTCACCAATC TGCTATTCCA 
1050
GGCATTGCAT TTGCTTCAAG TGGTGAATTC TCCGGTTTTC GTATACCAGC 
1100
ACGGTTTCAA GGCGAACAAG AGGAGCACGG CGGCGACAAC AAGCCGTCCT 
1150
CTGCTTCATC CGATTCTCGC CATTAA
1200

>AT1G53230.1 longest ORF length:391
MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK 
50
DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA 
100
KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH 
150
HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT 
200
QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ 
250
SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG 
300
PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP 
350
GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
400