fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G53230 (TCP3)

Alias TCP3
TF Classification
FioreDBTCP (Click to show phylogenetic tree)
RARTFTCP
AtTFDBTCP
PlnTFDBTCP (v3.0), TCP (v1.0)
DATFTCP
TAIR short description TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1)
TAIR annotation Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. (.1)
Gene model
Gene model cDNA support
AT1G53230.1 34
Entry clone (w/o stop) RE_0989_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45962: other biological processes ->positive regulation of development, heterochronic
(P) 48366: developmental processes ->leaf development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR319a: 3'-TCCCTCGAGGGAAGTCAGGTT-5'
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella 1 1
Total 1 1 1 2 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
DLGHQDLRLSLQSFQD at 221/391 in soybean Gm016057 (Type III)
SSQSQDLRLSLQSFQE at 218/414 in poplar Pt032683 (Type II)
SSQSQDLRLSLLSFQG at 214/408 in poplar Pt024326 (Type III)
DLGQQDLRLSLQSFQD at 203/371 in soybean Gm033704 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        cotyledon, leaf, sepal, petal, stamen, silique, 

         adventitious shoot formation (direct input), 
         short silique (direct input), 
         serrated leaf (direct input), 
         abnormal seedling (direct input), 
         abnormal sepal (direct input), 
         abnormal stamen (direct input), 
         abnormal shaped silique (direct input), 
         abnormal petal (direct input)


        		
       

       

        CRES-T phenotype from publication
        
abnormal seedling, rough surface leaf, serrated leaf, abnormal shaped leaf, aberrant margin, abnormal petal, short root, abnormal shaped silique, abnormal sepal, sterile or low fertility (PMID17307931)
        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID40
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           serrated and incurving leaves, dark green leaves, defect of ray floret, disk floret and involucre 
[Publication link]		
           and more...
          

          

           ID52
           Gentiana
           rolCp:AtCDS-SRDX
           2005-08-31
            
           No phenotype 
            
          

          

           ID71
           Chrysanthemum
           35S:AtCDS-RmD
           2006-01-06
            
           no phenotype (same as wild type) 
            
          

          

           ID72
           Chrysanthemum
           35S:AtCDS
           2006-01-06
            
           no phenotype (same as wild type) 
            
          

          

           ID118
           Eustoma
           35S:AtCDS-SRDX
           2006-06-27
            
            
            
          

          

           ID154
           Pharbitis
           35S:AtCDS-SRDX
           2006-10-18
            
           narrow robes and rounded lobe leaf 
[Publication link]		
           
          

          

           ID50002
           Torenia
           35S:AtCDS-SRDX
           2005-05-18
            
           serrated leaves; serrated, curly and parti-colored petals;  
[Publication link]		
           and more...
          

          

           ID50020
           Torenia
           35S:AtCDS
           2006-01-06
            
           no phenotype (same as wild type) 
            
          

          

           ID50021
           Torenia
           35S:AtCDS-RmD
           2006-01-06
            
           no phenotype (same as wild type) 
            
          

          

           ID53
           Cyclamen
           35S:AtCDS-SRDX
           2005-09-08
            
           serrated hyponastic leaves, small petal 
            
          

          

           ID179
           Cyclamen
           35S:CpOrtholog-SRDX
           2006-11-24
            
           serrated hyponastic leaves, small petal 
[Publication link]		
           and more...
          

          

           ID180
           Cyclamen
           35S:At_miR
           2007-02-26
           (miR319/JAW ove) 
           serrated hyponastic leaves, small petal 
            
          

          

           ID590
           Rosa
           35S:AtCDS-SRDX
           2008-10-01
            
           serrated leaf and petal, more complicated compound leaf,
leaf-like sepal 
[Publication link]		
           and more...
          

         

         

          Comment