Locus |
Common name |
Short description |
AT1G66500 |
|
Pre-mRNA cleavage complex II (.1) |
>AT1G66500.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, HaeII, HaeIII, HgaI, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, XbaI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
1117 |
AccII(FnuDII)
| CG|CG |
74, 124 |
AciI
| C|CGC |
128 |
AclI
| AA|CGTT |
140 |
AflIII
| A|CPuPyGT |
221 |
AluI
| AG|CT |
396, 686, 1234 |
ApoI
| Pu|AATTPy |
444, 486 |
BanI
| G|GPyPuCC |
1017 |
BfaI
| C|TAG |
42, 225 |
BsaAI
| PyAC|GTPu |
296 |
BsaBI
| GATNN|NNATC |
407, 1031 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
1017 |
BsrI
| ACTGGN| |
864 |
BstBI
| TT|CGAA |
540 |
BstF5I
| GGATGNN| |
893, 1027, 1101 |
BstUI
| CG|CG |
74, 124 |
BstYI
| Pu|GATCPy |
13 |
Cac8I
| GCN|NGC |
1020, 1243 |
DdeI
| C|TNAG |
25, 612, 1177 |
DpnI
| GA-CH3|TC |
12, 147, 171, 1031 |
DpnII
| |GATC |
12, 147, 171, 1031 |
EcoRI
| G|AATTC |
444 |
Fnu4HI
| GC|NGC |
128, 924 |
FspI
| TGC|GCA |
1045 |
HhaI
| GCG|C |
125, 155, 1044 |
HinP1I
| G|CGC |
125, 155, 1044 |
HindIII
| A|AGCTT |
397, 687 |
HinfI
| G|ANTC |
91, 306, 420, 533, 666, 723, 784 |
Hpy188I
| TCN|GA |
26, 94, 145, 169, 326, 440, 461, 527, 747, 1034 |
Hpy99I
| CG[AT]CG| |
928 |
HpyCH4III
| ACN|GT |
82, 118, 942, 1215 |
HpyCH4IV
| A|CGT |
139, 219, 295 |
HpyCH4V
| TG|CA |
289, 570, 904, 922, 972, 1111 |
MboI
| |GATC |
12, 147, 171, 1031 |
MfeI
| C|AATTG |
252, 581 |
MseI
| T|TAA |
621, 683, 708, 732, 1121, 1149 |
MslI
| CAPyNN|NNPuTG |
200, 912, 1088 |
MwoI
| GCNNNNN|NNGC |
73, 1051 |
NlaIII
| CATG| |
200, 544, 719, 814, 824, 1012, 1082, 1145 |
NlaIV
| GGN|NCC |
438, 1017 |
NsiI
| ATGCA|T |
571 |
NspI
| PuCATG|Py |
825 |
PflFI
| GACN|NNGTC |
866 |
RsaI
| GT|AC |
491 |
Sau3AI
| |GATC |
12, 147, 171, 1031 |
SfcI
| C|TPuPyAG |
1238 |
SnaBI
| TAC|GTA |
296 |
Taq��I
| T|CGA |
482, 539, 715, 884, 1196 |
TfiI
| G|A[AT]TC |
91, 306, 420, 533, 666, 723, 784 |
TseI
| G|C[AT]GC |
924 |
Tsp45I
| |GT[CG]AC |
704 |
Tsp509I
| |AATT |
165, 251, 278, 320, 367, 443, 464, 485, 580, 597, 1040 |
Tth111I
| GACN|NNGTC |
866 |
XcmI
| CCANNNNN|NNNNTGG |
863 |
Click here to view TAIR data
>AT1G66500.1 length:1251
ATGGCATCAA ACGGATCTTT CTCTGCTCAG AGAAACGCAA ACGCTAGAAC | 50 |
AACGATGAAG AGAAGAAGCG ACAATCGCGG TTACGGTGGC GGAATCGGAG | 100 |
GTTATCAAGA GGAGACGAAC CGTTACGCGC CGCCGCAAAA ACGTTTCAGA | 150 |
TCACAAGCGC AACAGCAATT CCGATCTGGT CATAATCCTC TGTATCATCA | 200 |
TCATGGTAGT AATAATAATA ACGTGTCTAG GGTTTCTTCT CAATCATATA | 250 |
ACAATTGCGG TGTTGATGTG ATTGCTTCTA ATTCAAGTTT TGCATTACGT | 300 |
AACAATGATT CTAACACCAA CAATTATCAG AAACCCTTTG TTGCTGGTTA | 350 |
TGGAAACCCT AATCCCCAAA TTGTTCCTCT TCCATTACCT TATCGTAAGC | 400 |
TTGATGACAA TCTCTCTTTA GATTCGTTAC CTGATTGGGT TCCGAATTCA | 450 |
AGAACCCTAA CTCCGAATTA TCCTGTTAGG TCATCGAATT TTGTACCAAA | 500 |
CACTCCTGTT TTTACGAATG TTCAAAATCC GATGAATCAT TCGAACATGG | 550 |
TTTCAGTTGT GTCTCAATCT ATGCATCAAC CAATTGTTTT GAGCAAAGAA | 600 |
TTGACTGATT TGCTTAGTCT TCTTAACAAT GAGAAAGAGA AGAAAACTTT | 650 |
AGAAGCAAGT AATAGTGATT CTTTGCCTGT TGGATTAAGC TTTGATAATC | 700 |
CATCGTCACT TAATGTTCGA CATGAATCTG TGATTAAGTC TCTGTATTCT | 750 |
GATATGCCGA GACAATGTTC ATCGTGTGGG TTGAGATTCA AGTGTCAAGA | 800 |
AGAGCATAGT AAACACATGG ATTGGCATGT AAGGAAGAAC AGGTCGGTGA | 850 |
AAACCACTAC AAGACTGGGT CAGCAACCGA AGAAATCGAG GGGATGGTTA | 900 |
GCAAGTGCAT CTTTATGGCT TTGTGCAGCG ACGGGAGGAG AGACGGTAGA | 950 |
AGTAGCATCT TTTGGAGGAG AAATGCAGAA GAAGAAAGGA AAGGACGAAG | 1000 |
AACCAAAACA ACTCATGGTG CCTGCGGATG AAGATCAGAA GAATTGCGCA | 1050 |
TTATGCGTAG AGCCGTTTGA AGAGTTCTTT AGCCATGAAG ATGATGATTG | 1100 |
GATGTATAAA GATGCAGTCT ACTTAACCAA GAATGGTCGT ATAGTTCATG | 1150 |
TTAAGTGTAT GCCTGAACCC CGACCTGCTA AGGATTTGAG AGAGCCTTCG | 1200 |
AGGGTAATGT CTGTTACAGT TCCATCGGTT GCGAAAGCTA TAGCCTGCTG | 1250 |
A | 1300 |
>AT1G66500.1 longest ORF length:416
MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR | 50 |
SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR | 100 |
NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS | 150 |
RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE | 200 |
LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS | 250 |
DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL | 300 |
ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA | 350 |
LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS | 400 |
RVMSVTVPSV AKAIAC | 450 |
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