fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G66500 Pre-mRNA cleavage complex II (.1)

>AT1G66500.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, HaeII, HaeIII, HgaI, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 1117
AccII(FnuDII) CG|CG 74, 124
AciI C|CGC 128
AclI AA|CGTT 140
AflIII A|CPuPyGT 221
AluI AG|CT 396, 686, 1234
ApoI Pu|AATTPy 444, 486
BanI G|GPyPuCC 1017
BfaI C|TAG 42, 225
BsaAI PyAC|GTPu 296
BsaBI GATNN|NNATC 407, 1031
BspT107I(HgiCI) G|G[TC][AG]CC 1017
BsrI ACTGGN| 864
BstBI TT|CGAA 540
BstF5I GGATGNN| 893, 1027, 1101
BstUI CG|CG 74, 124
BstYI Pu|GATCPy 13
Cac8I GCN|NGC 1020, 1243
DdeI C|TNAG 25, 612, 1177
DpnI GA-CH3|TC 12, 147, 171, 1031
DpnII |GATC 12, 147, 171, 1031
EcoRI G|AATTC 444
Fnu4HI GC|NGC 128, 924
FspI TGC|GCA 1045
HhaI GCG|C 125, 155, 1044
HinP1I G|CGC 125, 155, 1044
HindIII A|AGCTT 397, 687
HinfI G|ANTC 91, 306, 420, 533, 666, 723, 784
Hpy188I TCN|GA 26, 94, 145, 169, 326, 440, 461, 527, 747, 1034
Hpy99I CG[AT]CG| 928
HpyCH4III ACN|GT 82, 118, 942, 1215
HpyCH4IV A|CGT 139, 219, 295
HpyCH4V TG|CA 289, 570, 904, 922, 972, 1111
MboI |GATC 12, 147, 171, 1031
MfeI C|AATTG 252, 581
MseI T|TAA 621, 683, 708, 732, 1121, 1149
MslI CAPyNN|NNPuTG 200, 912, 1088
MwoI GCNNNNN|NNGC 73, 1051
NlaIII CATG| 200, 544, 719, 814, 824, 1012, 1082, 1145
NlaIV GGN|NCC 438, 1017
NsiI ATGCA|T 571
NspI PuCATG|Py 825
PflFI GACN|NNGTC 866
RsaI GT|AC 491
Sau3AI |GATC 12, 147, 171, 1031
SfcI C|TPuPyAG 1238
SnaBI TAC|GTA 296
Taq��I T|CGA 482, 539, 715, 884, 1196
TfiI G|A[AT]TC 91, 306, 420, 533, 666, 723, 784
TseI G|C[AT]GC 924
Tsp45I |GT[CG]AC 704
Tsp509I |AATT 165, 251, 278, 320, 367, 443, 464, 485, 580, 597, 1040
Tth111I GACN|NNGTC 866
XcmI CCANNNNN|NNNNTGG 863


Click here to view TAIR data

>AT1G66500.1 length:1251
ATGGCATCAA ACGGATCTTT CTCTGCTCAG AGAAACGCAA ACGCTAGAAC 
50
AACGATGAAG AGAAGAAGCG ACAATCGCGG TTACGGTGGC GGAATCGGAG 
100
GTTATCAAGA GGAGACGAAC CGTTACGCGC CGCCGCAAAA ACGTTTCAGA 
150
TCACAAGCGC AACAGCAATT CCGATCTGGT CATAATCCTC TGTATCATCA 
200
TCATGGTAGT AATAATAATA ACGTGTCTAG GGTTTCTTCT CAATCATATA 
250
ACAATTGCGG TGTTGATGTG ATTGCTTCTA ATTCAAGTTT TGCATTACGT 
300
AACAATGATT CTAACACCAA CAATTATCAG AAACCCTTTG TTGCTGGTTA 
350
TGGAAACCCT AATCCCCAAA TTGTTCCTCT TCCATTACCT TATCGTAAGC 
400
TTGATGACAA TCTCTCTTTA GATTCGTTAC CTGATTGGGT TCCGAATTCA 
450
AGAACCCTAA CTCCGAATTA TCCTGTTAGG TCATCGAATT TTGTACCAAA 
500
CACTCCTGTT TTTACGAATG TTCAAAATCC GATGAATCAT TCGAACATGG 
550
TTTCAGTTGT GTCTCAATCT ATGCATCAAC CAATTGTTTT GAGCAAAGAA 
600
TTGACTGATT TGCTTAGTCT TCTTAACAAT GAGAAAGAGA AGAAAACTTT 
650
AGAAGCAAGT AATAGTGATT CTTTGCCTGT TGGATTAAGC TTTGATAATC 
700
CATCGTCACT TAATGTTCGA CATGAATCTG TGATTAAGTC TCTGTATTCT 
750
GATATGCCGA GACAATGTTC ATCGTGTGGG TTGAGATTCA AGTGTCAAGA 
800
AGAGCATAGT AAACACATGG ATTGGCATGT AAGGAAGAAC AGGTCGGTGA 
850
AAACCACTAC AAGACTGGGT CAGCAACCGA AGAAATCGAG GGGATGGTTA 
900
GCAAGTGCAT CTTTATGGCT TTGTGCAGCG ACGGGAGGAG AGACGGTAGA 
950
AGTAGCATCT TTTGGAGGAG AAATGCAGAA GAAGAAAGGA AAGGACGAAG 
1000
AACCAAAACA ACTCATGGTG CCTGCGGATG AAGATCAGAA GAATTGCGCA 
1050
TTATGCGTAG AGCCGTTTGA AGAGTTCTTT AGCCATGAAG ATGATGATTG 
1100
GATGTATAAA GATGCAGTCT ACTTAACCAA GAATGGTCGT ATAGTTCATG 
1150
TTAAGTGTAT GCCTGAACCC CGACCTGCTA AGGATTTGAG AGAGCCTTCG 
1200
AGGGTAATGT CTGTTACAGT TCCATCGGTT GCGAAAGCTA TAGCCTGCTG 
1250
A
1300

>AT1G66500.1 longest ORF length:416
MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR 
50
SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR 
100
NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS 
150
RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE 
200
LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS 
250
DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL 
300
ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA 
350
LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS 
400
RVMSVTVPSV AKAIAC
450