fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G68640 PAN PERIANTHIA, bZIP transcription factor family protein (.1)

>AT1G68640.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AciI, AclI, AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, StyI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 874
AccI GT|[AC][TG]AC 506
AccII(FnuDII) CG|CG 800, 1277
AflII C|TTAAG 759, 961
AflIII A|CPuPyGT 721, 801
AhdI GACNNN|NNGTC 503
AluI AG|CT 8, 124, 160, 352, 600, 612, 622, 1072, 1242, 1270, 1325
ApoI Pu|AATTPy 774, 1253
AvaI C|PyCGPuG 1093
AvaII G|G[AT]CC 995, 1119
BamHI G|GATCC 984
BanII GPuGCPy|C 613, 623
BclI T|GATCA 489, 749
BfaI C|TAG 275, 483, 531, 602, 806, 1347
BsaBI GATNN|NNATC 945
BsaHI GPu|CGPyC 874
BsiHKAI G[AT]GC[AT]|C 613, 623, 1319
BslI CCNNNNN|NNGG 105, 1208
BsoBI C|PyCGPuG 1093
Bsp1286I G[GAT]GC[CAT]|C 613, 623, 1319
BspDI AT|CGAT 130
BssKI |CCNGG 521, 1208
BstAPI GCANNNN|NTGC 1050, 1140
BstF5I GGATGNN| 441, 814, 1051
BstNI CC|[AT]GG 1208
BstUI CG|CG 800, 1277
BstYI Pu|GATCPy 637, 984
Cac8I GCN|NGC 594, 625, 1276
ClaI AT|CGAT 130
DdeI C|TNAG 46, 415, 514, 890, 1314, 1323
DpnI GA-CH3|TC 464, 488, 636, 665, 748, 762, 794, 945, 983
DpnII |GATC 464, 488, 636, 665, 748, 762, 794, 945, 983
EcoNI CCTNN|NNNAGG 1208
EcoRI G|AATTC 774, 1253
Fnu4HI GC|NGC 7, 528, 681, 1272
HhaI GCG|C 1278
HinP1I G|CGC 1278
HincII GTPy|PuAC 371, 506, 871
HinfI G|ANTC 342, 413, 586, 824
HpaII C|CGG 520, 684
Hpy188I TCN|GA 64, 462, 515, 951
Hpy99I CG[AT]CG| 178, 504
HpyCH4III ACN|GT 18, 189, 367
HpyCH4IV A|CGT 179, 721, 873
HpyCH4V TG|CA 0, 595, 1016, 1051, 1141, 1236
MboI |GATC 464, 488, 636, 665, 748, 762, 794, 945, 983
MluI A|CGCGT 801
MseI T|TAA 134, 758, 960
MslI CAPyNN|NNPuTG 833
MspA1I C[AC]G|C[GT]G 662
MspI C|CGG 520, 684
MwoI GCNNNNN|NNGC 599, 1050, 1140, 1183, 1278
N.BstNBI GAGTCNNNN|N 829
NciI CC|[CG]GG 521
NdeI CA|TATG 560, 883, 1159
NlaIII CATG| 116, 895, 925, 977, 1066
NlaIV GGN|NCC 974, 984, 1119
NsiI ATGCA|T 1052
NspI PuCATG|Py 896
PaeR7I C|TCGAG 1093
PflMI CCANNNN|NTGG 105
PspGI |CC[AT]GG 1208
RsaI GT|AC 280, 861
SacI GAGCT|C 613, 623
SalI G|TCGAC 506
Sau3AI |GATC 464, 488, 636, 665, 748, 762, 794, 945, 983
Sau96I G|GNCC 995, 1119
ScrFI CC|NGG 521, 1208
SmlI C|TPyPuAG 82, 225, 574, 759, 961, 1093
SpeI A|CTAGT 276
SspI AAT|ATT 840
Taqƒ¿I T|CGA 129, 505, 583, 1092
TfiI G|A[AT]TC 342, 586
TliI C|TCGAG 1093
TseI G|C[AT]GC 7, 528, 681, 1272
Tsp45I |GT[CG]AC 147, 787, 826, 1058
Tsp509I |AATT 455, 708, 773, 856, 1252
XhoI C|TCGAG 1093


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>AT1G68640.1 length:1359
ATGCAGAGCA GCTTCAAAAC CGTTCCTTTC ACTCCTGATT TCTACTCTCA 
50
GTCTTCTTAC TTCTTCAGAG GAGATAGTTG TCTTGAGGAG TTTCATCAAC 
100
CAGTCAATGG TTTTCACCAT GAAGAAGCTA TCGATTTAAG TCCAAATGTC 
150
ACTATTGCTT CAGCTAACTT ACACTACACG ACGTTTGATA CGGTTATGGA 
200
TTGTGGTGGT GGTGGTGGTG GTGGCTTGAG GGAGAGACTT GAAGGAGGAG 
250
AAGAGGAGTG TTTGGACACA GGGCAACTAG TGTACCAGAA AGGGACAAGA 
300
TTAGTAGGAG GAGGAGTAGG AGAAGTGAAC AGCAGTTGGT GTGATTCGGT 
350
TTCAGCTATG GCTGATAACA GTCAACATAC TGACACTTCC ACAGATATTG 
400
ATACTGATGA CAAGACTCAG TTGAATGGAG GTCATCAAGG GATGCTATTG 
450
GCTACAAATT GTTCAGATCA ATCCAATGTG AAATCTAGTG ATCAAAGGAC 
500
ACTTCGTCGA CTTGCTCAGA ACCGGGAGGC TGCTAGGAAA AGTCGGTTGA 
550
GGAAAAAGGC ATATGTTCAG CAACTTGAGA ATAGTCGAAT CAGGCTTGCA 
600
CAGCTAGAGG AAGAGCTCAA AAGAGCTCGC CAACAGGGAT CTTTGGTTGA 
650
AAGAGGAGTT TCAGCGGATC ACACGCATTT GGCAGCCGGA AATGGTGTCT 
700
TTTCATTTGA ATTGGAATAT ACACGTTGGA AGGAAGAACA TCAAAGAATG 
750
ATCAACGACT TAAGATCGGG TGTGAATTCG CAGTTAGGTG ACAACGATCT 
800
ACGCGTTCTA GTGGATGCTG TGATGAGTCA CTATGATGAA ATATTCAGGC 
850
TAAAGGGAAT TGGTACTAAA GTTGACGTCT TTCATATGCT CTCAGGCATG 
900
TGGAAGACAC CTGCCGAGAG ATTTTTCATG TGGTTAGGTG GATTTAGATC 
950
ATCAGAGTTA CTTAAGATAT TGGGGAACCA TGTGGATCCA TTGACGGACC 
1000
AGCAGTTGAT AGGCATTTGC AACCTTCAGC AATCGTCTCA ACAAGCAGAG 
1050
GATGCATTGT CACAAGGCAT GGAAGCTCTA CAACAATCAC TTCTCGAGAC 
1100
GCTTTCTTCT GCTTCAATGG GTCCAAACTC TTCAGCAAAT GTTGCAGATT 
1150
ATATGGGTCA TATGGCTATG GCTATGGGCA AACTTGGCAC TCTTGAAAAC 
1200
TTCCTTCGCC AGGCTGATTT ATTGAGGCAA CAAACTCTGC AACAGCTTCA 
1250
CAGAATTCTC ACCACACGAC AAGCTGCTCG CGCCTTTTTG GTCATCCACG 
1300
ATTATATTTC TCGGCTTAGA GCACTTAGCT CTCTATGGTT AGCCAGACCT 
1350
AGAGACTAA
1400

>AT1G68640.1 longest ORF length:452
MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV 
50
TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR 
100
LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL 
150
ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA 
200
QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM 
250
INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM 
300
WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE 
350
DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN 
400
FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP 
450
RD
500