Locus |
Common name |
Short description |
AT1G68640 |
PAN |
PERIANTHIA, bZIP transcription factor family protein (.1) |
>AT1G68640.1 CDS map
>>Show genomic map

Uncut enzymes: Acc65I, AccIII(BspMII), AciI, AclI, AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, StyI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
874 |
AccI
| GT|[AC][TG]AC |
506 |
AccII(FnuDII)
| CG|CG |
800, 1277 |
AflII
| C|TTAAG |
759, 961 |
AflIII
| A|CPuPyGT |
721, 801 |
AhdI
| GACNNN|NNGTC |
503 |
AluI
| AG|CT |
8, 124, 160, 352, 600, 612, 622, 1072, 1242, 1270, 1325 |
ApoI
| Pu|AATTPy |
774, 1253 |
AvaI
| C|PyCGPuG |
1093 |
AvaII
| G|G[AT]CC |
995, 1119 |
BamHI
| G|GATCC |
984 |
BanII
| GPuGCPy|C |
613, 623 |
BclI
| T|GATCA |
489, 749 |
BfaI
| C|TAG |
275, 483, 531, 602, 806, 1347 |
BsaBI
| GATNN|NNATC |
945 |
BsaHI
| GPu|CGPyC |
874 |
BsiHKAI
| G[AT]GC[AT]|C |
613, 623, 1319 |
BslI
| CCNNNNN|NNGG |
105, 1208 |
BsoBI
| C|PyCGPuG |
1093 |
Bsp1286I
| G[GAT]GC[CAT]|C |
613, 623, 1319 |
BspDI
| AT|CGAT |
130 |
BssKI
| |CCNGG |
521, 1208 |
BstAPI
| GCANNNN|NTGC |
1050, 1140 |
BstF5I
| GGATGNN| |
441, 814, 1051 |
BstNI
| CC|[AT]GG |
1208 |
BstUI
| CG|CG |
800, 1277 |
BstYI
| Pu|GATCPy |
637, 984 |
Cac8I
| GCN|NGC |
594, 625, 1276 |
ClaI
| AT|CGAT |
130 |
DdeI
| C|TNAG |
46, 415, 514, 890, 1314, 1323 |
DpnI
| GA-CH3|TC |
464, 488, 636, 665, 748, 762, 794, 945, 983 |
DpnII
| |GATC |
464, 488, 636, 665, 748, 762, 794, 945, 983 |
EcoNI
| CCTNN|NNNAGG |
1208 |
EcoRI
| G|AATTC |
774, 1253 |
Fnu4HI
| GC|NGC |
7, 528, 681, 1272 |
HhaI
| GCG|C |
1278 |
HinP1I
| G|CGC |
1278 |
HincII
| GTPy|PuAC |
371, 506, 871 |
HinfI
| G|ANTC |
342, 413, 586, 824 |
HpaII
| C|CGG |
520, 684 |
Hpy188I
| TCN|GA |
64, 462, 515, 951 |
Hpy99I
| CG[AT]CG| |
178, 504 |
HpyCH4III
| ACN|GT |
18, 189, 367 |
HpyCH4IV
| A|CGT |
179, 721, 873 |
HpyCH4V
| TG|CA |
0, 595, 1016, 1051, 1141, 1236 |
MboI
| |GATC |
464, 488, 636, 665, 748, 762, 794, 945, 983 |
MluI
| A|CGCGT |
801 |
MseI
| T|TAA |
134, 758, 960 |
MslI
| CAPyNN|NNPuTG |
833 |
MspA1I
| C[AC]G|C[GT]G |
662 |
MspI
| C|CGG |
520, 684 |
MwoI
| GCNNNNN|NNGC |
599, 1050, 1140, 1183, 1278 |
N.BstNBI
| GAGTCNNNN|N |
829 |
NciI
| CC|[CG]GG |
521 |
NdeI
| CA|TATG |
560, 883, 1159 |
NlaIII
| CATG| |
116, 895, 925, 977, 1066 |
NlaIV
| GGN|NCC |
974, 984, 1119 |
NsiI
| ATGCA|T |
1052 |
NspI
| PuCATG|Py |
896 |
PaeR7I
| C|TCGAG |
1093 |
PflMI
| CCANNNN|NTGG |
105 |
PspGI
| |CC[AT]GG |
1208 |
RsaI
| GT|AC |
280, 861 |
SacI
| GAGCT|C |
613, 623 |
SalI
| G|TCGAC |
506 |
Sau3AI
| |GATC |
464, 488, 636, 665, 748, 762, 794, 945, 983 |
Sau96I
| G|GNCC |
995, 1119 |
ScrFI
| CC|NGG |
521, 1208 |
SmlI
| C|TPyPuAG |
82, 225, 574, 759, 961, 1093 |
SpeI
| A|CTAGT |
276 |
SspI
| AAT|ATT |
840 |
Taqƒ¿I
| T|CGA |
129, 505, 583, 1092 |
TfiI
| G|A[AT]TC |
342, 586 |
TliI
| C|TCGAG |
1093 |
TseI
| G|C[AT]GC |
7, 528, 681, 1272 |
Tsp45I
| |GT[CG]AC |
147, 787, 826, 1058 |
Tsp509I
| |AATT |
455, 708, 773, 856, 1252 |
XhoI
| C|TCGAG |
1093 |
Click here to view TAIR data
>AT1G68640.1 length:1359
ATGCAGAGCA GCTTCAAAAC CGTTCCTTTC ACTCCTGATT TCTACTCTCA | 50 |
GTCTTCTTAC TTCTTCAGAG GAGATAGTTG TCTTGAGGAG TTTCATCAAC | 100 |
CAGTCAATGG TTTTCACCAT GAAGAAGCTA TCGATTTAAG TCCAAATGTC | 150 |
ACTATTGCTT CAGCTAACTT ACACTACACG ACGTTTGATA CGGTTATGGA | 200 |
TTGTGGTGGT GGTGGTGGTG GTGGCTTGAG GGAGAGACTT GAAGGAGGAG | 250 |
AAGAGGAGTG TTTGGACACA GGGCAACTAG TGTACCAGAA AGGGACAAGA | 300 |
TTAGTAGGAG GAGGAGTAGG AGAAGTGAAC AGCAGTTGGT GTGATTCGGT | 350 |
TTCAGCTATG GCTGATAACA GTCAACATAC TGACACTTCC ACAGATATTG | 400 |
ATACTGATGA CAAGACTCAG TTGAATGGAG GTCATCAAGG GATGCTATTG | 450 |
GCTACAAATT GTTCAGATCA ATCCAATGTG AAATCTAGTG ATCAAAGGAC | 500 |
ACTTCGTCGA CTTGCTCAGA ACCGGGAGGC TGCTAGGAAA AGTCGGTTGA | 550 |
GGAAAAAGGC ATATGTTCAG CAACTTGAGA ATAGTCGAAT CAGGCTTGCA | 600 |
CAGCTAGAGG AAGAGCTCAA AAGAGCTCGC CAACAGGGAT CTTTGGTTGA | 650 |
AAGAGGAGTT TCAGCGGATC ACACGCATTT GGCAGCCGGA AATGGTGTCT | 700 |
TTTCATTTGA ATTGGAATAT ACACGTTGGA AGGAAGAACA TCAAAGAATG | 750 |
ATCAACGACT TAAGATCGGG TGTGAATTCG CAGTTAGGTG ACAACGATCT | 800 |
ACGCGTTCTA GTGGATGCTG TGATGAGTCA CTATGATGAA ATATTCAGGC | 850 |
TAAAGGGAAT TGGTACTAAA GTTGACGTCT TTCATATGCT CTCAGGCATG | 900 |
TGGAAGACAC CTGCCGAGAG ATTTTTCATG TGGTTAGGTG GATTTAGATC | 950 |
ATCAGAGTTA CTTAAGATAT TGGGGAACCA TGTGGATCCA TTGACGGACC | 1000 |
AGCAGTTGAT AGGCATTTGC AACCTTCAGC AATCGTCTCA ACAAGCAGAG | 1050 |
GATGCATTGT CACAAGGCAT GGAAGCTCTA CAACAATCAC TTCTCGAGAC | 1100 |
GCTTTCTTCT GCTTCAATGG GTCCAAACTC TTCAGCAAAT GTTGCAGATT | 1150 |
ATATGGGTCA TATGGCTATG GCTATGGGCA AACTTGGCAC TCTTGAAAAC | 1200 |
TTCCTTCGCC AGGCTGATTT ATTGAGGCAA CAAACTCTGC AACAGCTTCA | 1250 |
CAGAATTCTC ACCACACGAC AAGCTGCTCG CGCCTTTTTG GTCATCCACG | 1300 |
ATTATATTTC TCGGCTTAGA GCACTTAGCT CTCTATGGTT AGCCAGACCT | 1350 |
AGAGACTAA | 1400 |
>AT1G68640.1 longest ORF length:452
MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV | 50 |
TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR | 100 |
LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL | 150 |
ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA | 200 |
QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM | 250 |
INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM | 300 |
WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE | 350 |
DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN | 400 |
FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP | 450 |
RD | 500 |
|