fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G70920 ATHB18 homeobox-leucine zipper protein 18 (.1)

>AT1G70920.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AflII, AgeI, AhdI, AlwI, AlwNI, ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, , NarI, NciI, NcoI, NdeI, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AfeI AGC|GCT 465
AflIII A|CPuPyGT 162, 516
AluI AG|CT 20, 50, 207, 309, 352, 363
Aor51HI(Eco47III) AGC|GCT 465
AvaI C|PyCGPuG 186
BalI TGG|CCA 296
BanII GPuGCPy|C 353
BclI T|GATCA 78
BsaJI C|CNNGG 485, 505
BsiHKAI G[AT]GC[AT]|C 353
BslI CCNNNNN|NNGG 72
BsoBI C|PyCGPuG 186
Bsp1286I G[GAT]GC[CAT]|C 353
BsrFI Pu|CCGGPy 194, 578
BstF5I GGATGNN| 90, 144, 588
Cac8I GCN|NGC 194
Cfr10I [AG]|CCGG[TC] 194, 578
DdeI C|TNAG 277, 312, 570
DpnI GA-CH3|TC 77, 131, 145, 411
DpnII |GATC 77, 131, 145, 411
DraIII CACNNN|GTG 74
EaeI Py|GGCCPu 192, 296
Fnu4HI GC|NGC 197, 574
HaeII PuGCGC|Py 465
HaeIII GG|CC 1, 191, 295
HhaI GCG|C 199, 464
HinP1I G|CGC 199, 464
HincII GTPy|PuAC 166
HindIII A|AGCTT 310
HinfI G|ANTC 540
HpaII C|CGG 193, 577
Hpy188I TCN|GA 47, 356, 409
Hpy99I CG[AT]CG| 432
HpyCH4IV A|CGT 514
HpyCH4V TG|CA 151, 526
MboI |GATC 77, 131, 145, 411
MscI TGG|CCA 296
MseI T|TAA 32, 269, 491
MslI CAPyNN|NNPuTG 379
MspI C|CGG 193, 577
MwoI GCNNNNN|NNGC 199
NaeI GCC|GGC 194
NgoMIV G|CCGGC 194
NlaIII CATG| 161, 496
NspI PuCATG|Py 162
PciI A|CATGT 162
SacI GAGCT|C 353
Sau3AI |GATC 77, 131, 145, 411
Sau96I G|GNCC 2
Taqƒ¿I T|CGA 346, 430, 479
TseI G|C[AT]GC 574
Tsp45I |GT[CG]AC 519, 581
Tsp509I |AATT 14, 43, 592


Click here to view TAIR data

>AT1G70920.1 length:621
ATGGCCCTCT CACCTAATTC AAGCTCTTTA GATTTAACAA TCTCAATTCC 
50
GAGCTTCTCT CCATCTCCTT CACTTGGTGA TCATCACGGG ATGAGAGATT 
100
TTGACATAAA CCAAACACCA AAGACGGAAG AAGATCGTGA GTGGATGATC 
150
GGTGCAACAC CACATGTCAA CGAAGATGAT AGCAACTCGG GTGGCCGGCG 
200
GCGCAAAAAG CTCCGTCTAA CGAAAGAACA ATCACATCTT CTTGAAGAGA 
250
GTTTCATACA AAACCATACC TTAACCCCTA AGCAAAAAAA AGATTTGGCC 
300
ACCTTTTTGA AGCTTAGTCA AAGGCAAGTT GAGGTGTGGT TTCAAAATCG 
350
AAGAGCTCGG AGTAAGCTAA AGCACACGGA AATGGAATGT GAGTATCTAA 
400
AAAGATGGTT CGGATCGTTG AAGGAACAAA ATCGACGGCT ACAAATAGAA 
450
GTTGAAGAAC TACGAGCGCT AAAGCCATCA TCGACCTCGG CTTTAACCAT 
500
GTGTCCTCGG TGTGAACGTG TGACTGATGC AGTAGATAAT GACTCTAATG 
550
CCGTTCAAGA GGGGGCAGTT CTTAGCAGCC GGTCACGGAT GACAATTTCC 
600
TCTTCCTCTT CCCTCTGTTG A
650

>AT1G70920.1 longest ORF length:206
MALSPNSSSL DLTISIPSFS PSPSLGDHHG MRDFDINQTP KTEEDREWMI 
50
GATPHVNEDD SNSGGRRRKK LRLTKEQSHL LEESFIQNHT LTPKQKKDLA 
100
TFLKLSQRQV EVWFQNRRAR SKLKHTEMEC EYLKRWFGSL KEQNRRLQIE 
150
VEELRALKPS STSALTMCPR CERVTDAVDN DSNAVQEGAV LSSRSRMTIS 
200
SSSSLC
250