|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G79840 | GL2 | GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) |
>AT1G79840.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AclI, AflII, AlwI, ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstXI, BtrI, BtsI, ClaI, DraI, DraIII, EagI, EarI, EciI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, , NarI, NcoI, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, RsrII, SacII, SapI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, Tth111I, XcmI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 1216 |
| AccI | GT|[AC][TG]AC | 13, 1936, 2067, 2222 |
| AccII(FnuDII) | CG|CG | 1571, 1975 |
| AccIII(BspMII) | T|CCGGA | 89, 375 |
| AciI | C|CGC | 451, 838, 1381, 1570 |
| AfeI | AGC|GCT | 351 |
| AflIII | A|CPuPyGT | 17, 1352 |
| AgeI | A|CCGGT | 1399 |
| AhdI | GACNNN|NNGTC | 1426 |
| AluI | AG|CT | 271, 396, 519, 636, 645, 655, 1107, 1128, 1175, 1185, 1440, 1562, 1589, 1729, 1759, 1795, 1965, 2151 |
| AlwNI | CAGNNN|CTG | 397 |
| Aor51HI(Eco47III) | AGC|GCT | 351 |
| AvaI | C|PyCGPuG | 754 |
| AvaII | G|G[AT]CC | 192, 1603 |
| BalI | TGG|CCA | 812 |
| BanII | GPuGCPy|C | 637, 1191, 1415, 1675, 1796 |
| BfaI | C|TAG | 410, 512, 945 |
| BglI | GCCNNNN|NGGC | 1413 |
| BlpI | GC|TNAGC | 400, 1189 |
| BsaBI | GATNN|NNATC | 158, 207 |
| BsaHI | GPu|CGPyC | 742, 1216 |
| BsaJI | C|CNNGG | 132, 560, 1229, 1325, 1334, 1679, 1826, 2091 |
| BsaWI | [AT]|CCGG[AT] | 89, 375, 1140, 1288, 1399 |
| BsiEI | CGPuPy|CG | 1055, 1142 |
| BsiHKAI | G[AT]GC[AT]|C | 637, 1342, 1796, 1972 |
| BslI | CCNNNNN|NNGG | 122, 428, 503, 585, 809 |
| BsmI | GAATGCN| | 94 |
| BsoBI | C|PyCGPuG | 754 |
| Bsp1286I | G[GAT]GC[CAT]|C | 285, 637, 1191, 1342, 1415, 1675, 1796, 1972 |
| BspEI | T|CCGGA | 89, 375 |
| BspHI | T|CATGA | 1662 |
| BsrFI | Pu|CCGGPy | 1181, 1399 |
| BsrI | ACTGGN| | 853, 1424, 1624, 2055 |
| BssKI | |CCNGG | 131, 428, 921, 1333, 1519, 1648, 1668 |
| BstEII | G|GTNACC | 1330, 1716 |
| BstF5I | GGATGNN| | 1780 |
| BstNI | CC|[AT]GG | 131, 428, 921, 1333, 1648, 1668 |
| BstUI | CG|CG | 1571, 1975 |
| BstYI | Pu|GATCPy | 202 |
| BstZ17I | GTA|TAC | 1936 |
| Bsu36I | CC|TNAGG | 119, 819 |
| BtgI | C|CPuPyGG | 1229, 1679 |
| Cac8I | GCN|NGC | 404, 417, 684, 906, 1030, 1181, 1673, 1974 |
| Cfr10I | [AG]|CCGG[TC] | 1181, 1399 |
| DdeI | C|TNAG | 118, 188, 399, 818, 1188, 1195, 1388, 1546, 1847, 2192 |
| DpnI | GA-CH3|TC | 158, 201, 207, 233, 329, 334, 463, 602, 701, 1036, 1090, 1664, 1985 |
| DpnII | |GATC | 158, 201, 207, 233, 329, 334, 463, 602, 701, 1036, 1090, 1664, 1985 |
| DrdI | GACNNNN|NNGTC | 1222 |
| EaeI | Py|GGCCPu | 8, 812, 855, 2050 |
| EcoNI | CCTNN|NNNAGG | 503 |
| EcoO109I | PuG|GNCCPy | 193, 595, 1081 |
| Fnu4HI | GC|NGC | 106, 178, 270, 395, 454, 521, 654, 841, 1047, 1127, 1177, 1184, 1581, 1895, 1906, 2145 |
| HaeII | PuGCGC|Py | 351 |
| HaeIII | GG|CC | 7, 418, 593, 811, 854, 1080, 1405, 2049 |
| HhaI | GCG|C | 267, 350, 902, 1572, 1695 |
| HinP1I | G|CGC | 267, 350, 902, 1572, 1695 |
| HincII | GTPy|PuAC | 13, 148, 1393 |
| HindIII | A|AGCTT | 646, 1563 |
| HinfI | G|ANTC | 549, 863, 1494, 1684, 1923, 2017, 2043, 2163, 2172 |
| HpaII | C|CGG | 88, 102, 374, 1066, 1139, 1180, 1287, 1398, 1518 |
| Hpy188I | TCN|GA | 210, 332, 337, 696, 1117, 1265, 1501, 1547 |
| Hpy99I | CG[AT]CG| | 11, 239, 698, 1094, 1349, 1764 |
| HpyCH4III | ACN|GT | 165, 712, 1053, 1315, 1365, 1863 |
| HpyCH4IV | A|CGT | 1002, 1215, 1350, 1479, 2063 |
| HpyCH4V | TG|CA | 94, 652, 681, 1027, 1048, 1125, 1292, 1357, 1582, 1813, 1896, 2143 |
| MboI | |GATC | 158, 201, 207, 233, 329, 334, 463, 602, 701, 1036, 1090, 1664, 1985 |
| MscI | TGG|CCA | 812 |
| MseI | T|TAA | 2211 |
| MslI | CAPyNN|NNPuTG | 242, 1003, 1029, 1336, 1891 |
| MspA1I | C[AC]G|C[GT]G | 272, 397, 1108, 1129, 1186, 1966 |
| MspI | C|CGG | 88, 102, 374, 1066, 1139, 1180, 1287, 1398, 1518 |
| MwoI | GCNNNNN|NNGC | 392, 404, 583, 644, 1413, 1570, 1581 |
| N.BstNBI | GAGTCNNNN|N | 554, 1689, 1928, 2048, 2168 |
| NaeI | GCC|GGC | 1181 |
| NciI | CC|[CG]GG | 1519 |
| NdeI | CA|TATG | 1887 |
| NgoMIV | G|CCGGC | 1181 |
| NlaIII | CATG| | 16, 343, 541, 690, 997, 1029, 1468, 1633, 1661, 1769, 1799, 1982 |
| NlaIV | GGN|NCC | 193, 420, 443, 595, 836 |
| NsiI | ATGCA|T | 95 |
| NspI | PuCATG|Py | 17, 1030, 1634 |
| PaeR7I | C|TCGAG | 754 |
| PciI | A|CATGT | 17 |
| PflMI | CCANNNN|NTGG | 809 |
| PpuMI | PuG|G[AT]CCPy | 193 |
| PspGI | |CC[AT]GG | 131, 428, 921, 1333, 1648, 1668 |
| PstI | CTGCA|G | 682, 2144 |
| PvuII | CAG|CTG | 272, 397, 1108, 1129, 1186, 1966 |
| RsaI | GT|AC | 880, 1162 |
| SacI | GAGCT|C | 637, 1796 |
| SalI | G|TCGAC | 13 |
| Sau3AI | |GATC | 158, 201, 207, 233, 329, 334, 463, 602, 701, 1036, 1090, 1664, 1985 |
| Sau96I | G|GNCC | 192, 419, 594, 1080, 1603 |
| SbfI | CCTGCA|GG | 683 |
| ScrFI | CC|NGG | 131, 428, 921, 1333, 1519, 1648, 1668 |
| SfcI | C|TPuPyAG | 682, 2144 |
| SmlI | C|TPyPuAG | 502, 754, 886 |
| SphI | GCATG|C | 1030 |
| StyI | C|C[AT][AT]GG | 560, 1325, 1826, 2091 |
| Taq��I | T|CGA | 12, 612, 639, 726, 753, 936, 1056, 1092, 1273, 1299, 1347, 1417, 1740, 1871, 2229 |
| TfiI | G|A[AT]TC | 863, 2017, 2172 |
| TliI | C|TCGAG | 754 |
| TseI | G|C[AT]GC | 106, 178, 270, 395, 521, 654, 841, 1047, 1127, 1177, 1184, 1581, 1895, 1906, 2145 |
| Tsp45I | |GT[CG]AC | 319, 1318, 1329, 2045, 2178, 2196 |
| Tsp509I | |AATT | 566 |
| TspRI | NNCA[CG]TGNN| | 166, 1424, 1851, 1866, 2055 |
| XbaI | T|CTAGA | 946 |
| XhoI | C|TCGAG | 754 |
Click here to view TAIR data
>AT1G79840.1 length:2244
ATGTCAATGG CCGTCGACAT GTCTTCCAAA CAACCCACCA AAGACTTTTT | 50 |
CTCCTCTCCA GCCCTCTCTC TATCTCTCGC TGGGATATTC CGGAATGCAT | 100 |
CCTCCGGCAG CACCAACCCT GAGGAGGATT TCCTGGGCAG AAGAGTAGTT | 150 |
GACGATGAGG ATCGCACTGT GGAGATGAGC AGCGAGAACT CAGGACCCAC | 200 |
GAGATCCAGA TCAGAGGAGG ATTTGGAGGG TGAGGATCAC GACGATGAGG | 250 |
AGGAGGAAGA GGAGGACGGC GCAGCTGGAA ACAAGGGCAC TAATAAGAGA | 300 |
AAGAGGAAGA AGTATCATCG TCACACCACC GATCAGATCA GACACATGGA | 350 |
AGCGCTATTC AAAGAGACAC CACATCCGGA CGAGAAGCAA AGACAGCAGC | 400 |
TGAGCAAGCA ACTAGGGCTG GCCCCTCGCC AGGTCAAGTT CTGGTTCCAA | 450 |
AACCGCCGCA CACAGATCAA GGCTATTCAA GAACGGCACG AGAACTCCCT | 500 |
GCTCAAGGCG GAACTAGAGA AGCTGCGAGA GGAAAACAAA GCCATGAGGG | 550 |
AGTCTTTTTC CAAGGCTAAT TCCTCCTGCC CCAACTGCGG AGGAGGCCCC | 600 |
GATGATCTCC ACCTCGAAAA CTCCAAACTG AAAGCCGAGC TCGATAAGCT | 650 |
TCGTGCAGCT CTTGGACGCA CTCCCTATCC CCTGCAGGCT TCATGCTCCG | 700 |
ACGATCAAGA ACACCGTCTC GGCTCTCTCG ATTTCTACAC GGGCGTCTTT | 750 |
GCCCTCGAGA AGTCCCGTAT TGCCGAGATT TCTAACCGAG CCACCCTTGA | 800 |
ACTCCAGAAG ATGGCCACCT CAGGCGAACC TATGTGGCTC CGCAGCGTTG | 850 |
AGACTGGCCG TGAGATTCTC AACTACGATG AGTACCTCAA GGAGTTTCCC | 900 |
CAAGCGCAAG CCTCTTCGTT TCCTGGAAGG AAAACCATCG AAGCATCTAG | 950 |
AGATGCGGGG ATTGTGTTTA TGGACGCACA TAAACTTGCC CAGAGTTTCA | 1000 |
TGGACGTGGG ACAATGGAAA GAGACATTTG CATGCTTGAT CTCAAAGGCT | 1050 |
GCAACGGTCG ATGTTATCCG GCAAGGCGAA GGGCCTTCAC GGATCGACGG | 1100 |
GGCTATTCAG CTGATGTTCG GAGAGATGCA GCTGCTCACT CCGGTCGTCC | 1150 |
CCACAAGAGA AGTGTACTTC GTGAGAAGCT GCCGGCAGCT GAGCCCTGAG | 1200 |
AAATGGGCAA TAGTGGACGT CTCGGTCTCC GTGGAGGACA GCAACACGGA | 1250 |
GAAGGAGGCT TCTCTTCTGA AATGTCGAAA ACTCCCCTCC GGTTGCATCA | 1300 |
TCGAGGACAC CTCCAACGGT CACTCCAAGG TCACCTGGGT GGAGCACCTC | 1350 |
GACGTGTCTG CATCCACAGT TCAGCCTCTC TTCCGCTCCT TAGTCAACAC | 1400 |
CGGTTTGGCC TTTGGGGCTC GACACTGGGT CGCCACCCTT CAGCTCCATT | 1450 |
GCGAACGCCT TGTCTTCTTC ATGGCTACCA ACGTCCCCAC CAAAGACTCT | 1500 |
CTCGGAGTTA CAACTCTTGC CGGGAGAAAG AGTGTGCTGA AGATGGCTCA | 1550 |
GAGAATGACA CAAAGCTTCT ACCGCGCCAT TGCTGCATCA AGCTACCATC | 1600 |
AATGGACCAA AATCACCACC AAAACTGGAC AAGACATGCG GGTTTCTTCC | 1650 |
AGGAAGAACC TTCATGATCC TGGCGAGCCC ACGGGAGTCA TTGTCTGCGC | 1700 |
TTCTTCTTCG CTGTGGTTAC CTGTTTCTCC AGCTCTTCTC TTCGATTTCT | 1750 |
TTAGAGATGA AGCTCGTCGG CATGAGTGGG ATGCTTTGTC AAACGGAGCT | 1800 |
CATGTTCAGT CTATTGCAAA CTTATCCAAG GGACAAGACA GAGGCAACTC | 1850 |
AGTGGCAATC CAGACAGTGA AATCGAGAGA AAAGAGCATA TGGGTGCTGC | 1900 |
AAGACAGCAG CACTAACTCG TATGAGTCGG TGGTGGTATA CGCTCCCGTA | 1950 |
GATATAAACA CGACACAGCT GGTGCTCGCG GGACATGATC CAAGCAACAT | 2000 |
CCAAATCCTC CCCTCTGGAT TCTCAATCAT ACCTGATGGA GTAGAGTCAC | 2050 |
GGCCACTGGT AATAACGTCT ACACAAGACG ACAGAAACAG CCAAGGAGGG | 2100 |
TCGCTCCTGA CACTCGCCCT CCAAACCCTC ATCAACCCTT CTCCTGCAGC | 2150 |
AAAGCTGAAT ATGGAGTCTG TGGAATCCGT GACAAACCTC GTCTCAGTCA | 2200 |
CACTACACAA CATTAAGAGA AGTCTACAAA TCGAAGATTG CTGA | 2250 |
>AT1G79840.1 longest ORF length:747
MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV | 50 |
DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR | 100 |
KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ | 150 |
NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP | 200 |
DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF | 250 |
ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP | 300 |
QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA | 350 |
ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE | 400 |
KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL | 450 |
DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS | 500 |
LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS | 550 |
RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA | 600 |
HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV | 650 |
DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG | 700 |
SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC | 750 |