fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G01500 WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1)

>AT2G01500.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SspI, StuI, StyI, SwaI, TliI, TseI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 403
AciI C|CGC 114, 361
AclI AA|CGTT 313
AluI AG|CT 105, 219, 279, 447
AseI AT|TAAT 649
BclI T|GATCA 96, 438, 567
BfaI C|TAG 212, 342
BsaBI GATNN|NNATC 101, 652
BsaHI GPu|CGPyC 192, 243, 403
BsaWI [AT]|CCGG[AT] 639, 698, 717
BsrDI GCAATGNN| 94
BsrFI Pu|CCGGPy 746
BstYI Pu|GATCPy 260, 501
Cac8I GCN|NGC 769
Cfr10I [AG]|CCGG[TC] 746
DdeI C|TNAG 277
DpnI GA-CH3|TC 95, 202, 259, 437, 500, 542, 566
DpnII |GATC 95, 202, 259, 437, 500, 542, 566
DraI TTT|AAA 705
DrdI GACNNNN|NNGTC 664
Fnu4HI GC|NGC 165, 361
HaeIII GG|CC 743
HincII GTPy|PuAC 667
HindIII A|AGCTT 280
HinfI G|ANTC 185, 298, 332, 411, 561
HpaII C|CGG 638, 697, 716, 745
Hpy188I TCN|GA 188, 329, 440, 564, 569, 579, 803
Hpy99I CG[AT]CG| 190, 208, 247, 366, 656
HpyCH4III ACN|GT 76, 778
HpyCH4IV A|CGT 312, 402
HpyCH4V TG|CA 770
MboI |GATC 95, 202, 259, 437, 500, 542, 566
MseI T|TAA 84, 648, 704
MspI C|CGG 638, 697, 716, 745
MwoI GCNNNNN|NNGC 218
NlaIII CATG| 491, 545, 600, 768, 796
NspI PuCATG|Py 769
RsaI GT|AC 727
Sau3AI |GATC 95, 202, 259, 437, 500, 542, 566
SphI GCATG|C 769
Taqƒ¿I T|CGA 300, 430, 623, 654
TfiI G|A[AT]TC 185, 298, 332, 411, 561
Tsp509I |AATT 495
TspRI NNCA[CG]TGNN| 77
XmnI GAANN|NNTTC 316


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>AT2G01500.1 length:816
ATGGGCTACA TCTCCAACAA CAACCTCATC AACTATTTGC CCCTCTCTAC 
50
TACTCAACCT CCTCTTCTTC TCACCCACTG TGATATTAAC GGCAATGATC 
100
ACCATCAGCT CATAACCGCA TCATCAGGAG AACACGATAT TGATGAACGG 
150
AAAAACAACA TTCCTGCGGC GGCGACTTTG AGATGGAATC CGACGCCAGA 
200
GCAGATCACG ACGCTAGAAG AGCTTTACAG AAGCGGAACA CGGACGCCGA 
250
CGACGGAACA GATCCAACAG ATAGCATCTA AGCTTCGTAA ATATGGGAGA 
300
ATCGAAGGGA AGAACGTTTT CTATTGGTTT CAGAATCATA AGGCTAGAGA 
350
GAGACTAAAA CGCCGCCGTC GTGAAGGTGG TGCTATTATC AAACCACATA 
400
AAGACGTCAA GGATTCATCA TCAGGTGGTC ATCGAGTTGA TCAGACAAAG 
450
CTCTGCCCAT CTTTTCCACA CACAAACCGA CCACAGCCAC AGCATGAATT 
500
AGATCCTGCG AGTTACAATA AAGACAACAA TGCTAATAAT GAAGATCATG 
550
GGACGACTGA AGAATCTGAT CAGAGGGCAT CAGAGGTTGG TAAATACGCC 
600
ACATGGAGAA ATCTTGTTAC TTGGTCGATA ACTCAACAAC CGGAAGAGAT 
650
TAATATCGAC GAAAATGTCA ACGGAGAAGA AGAAGAAACG AGGGACAACC 
700
GGACTTTAAA TCTCTTTCCG GTTAGGGAGT ACCAAGAGAA AACAGGCCGG 
750
TTGATAGAGA AGACGAAAGC ATGCAACTAC TGTTACTACT ACGAGTTCAT 
800
GCCTCTGAAG AACTGA
850

>AT2G01500.1 longest ORF length:271
MGYISNNNLI NYLPLSTTQP PLLLTHCDIN GNDHHQLITA SSGEHDIDER 
50
KNNIPAAATL RWNPTPEQIT TLEELYRSGT RTPTTEQIQQ IASKLRKYGR 
100
IEGKNVFYWF QNHKARERLK RRRREGGAII KPHKDVKDSS SGGHRVDQTK 
150
LCPSFPHTNR PQPQHELDPA SYNKDNNANN EDHGTTEESD QRASEVGKYA 
200
TWRNLVTWSI TQQPEEINID ENVNGEEEET RDNRTLNLFP VREYQEKTGR 
250
LIEKTKACNY CYYYEFMPLK N
300