fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G01500 (WOX6, PFS2, HOS9)

Alias WOX6, PFS2, HOS9
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / WOX
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1)
TAIR annotation PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. (.1)
Gene model
Gene model cDNA support
AT2G01500.1 14
Entry clone (w/o stop) IE_03C07_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48314: developmental processes ->embryo sac morphogenesis
(C) 48353: nucleus ->primary endosperm nucleus
(P) 48366: developmental processes ->leaf development
(P) 48437: developmental processes ->floral organ development
(P) 48446: developmental processes ->petal morphogenesis
(P) 48482: developmental processes ->plant ovule morphogenesis
(P) 51301: other cellular processes ->cell division
(P) 51510: other cellular processes ->regulation of unidimensional cell growth
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9409: response to abiotic or biotic stimulus ->response to cold
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
TRDNRTLNLFPVREYQ at 234/271 in AT2G01500.1
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		Žq—tF¬‚³‚­•ªŒú‚­—ΔZ‚Å‚¨‚í‚ñŒ^(29/45), —cA•¨ŠúF•s’èŒ`‚̍זE‰ò(4/79), ã󎲒·‚­Žq—t¬‚³‚­ª’Z‚¢(31/79), –{—tFã•Î¶’·‹­(5/62), —ΔZ(3/62), bushy(16/62), ‰ÔF‰Šú‚̉Ԃªƒƒ[ƒbƒg‚·‚ê‚·‚ê‚ɍ炢‚Ä‚ª‚­‘½”(36/62), ‰Ô•Ù’Z(3/62), ‰Ô•¿F’Œ“ªó‚Ì“Ë‹N‚ ‚è(47/62), ‚³‚âFæ’[ŽlŠp‚¢(14/62), ‚²‚‚²‚Â(5/62), ‰ÔŒsF‚Ë‚¶‚Ü‚ª‚è(43/62), “Ë‹N‘½”(47/62), ‰ÔŒsE‰Ô•¿F—Z‡(27/62), ƒƒ[ƒbƒgFƒJƒEƒŠƒ“ó‚Ì’·‚­‚Ë‚¶‚­‚ꂽ—t‚ª“Ë‘Ro‚Ä‚«‚ĉԌs‚ª‚È‚©‚È‚©L‚Ñ‚È‚¢(49/62), ƒJƒEƒŠƒ“‚·‚ׂ·‚×(12/62), (phenotype_A20158,A20163:leaf_phenotype—“ŽQÆ/flower_phenotype—“ŽQÆ/silique_æ’[ŽlŠp/stem_”P‚¶‹È‚ª‚è/‰ÔŒsE‰Ô•¿“Ë‹N/‰ÔŒsE‰Ô•¿—Z‡/ƒƒ[ƒbƒgbushy/ƒJƒEƒŠƒ“‚·‚ׂ·‚×)
abnormal seedling (direct input), abnormal stem (direct input, A20158, A20163), bushy (A20158, A20163), thickened cotyledon (direct input), abnormal phyllotaxis (A21967), fused stem (direct input), late flowering (direct input), narrow leaf (A20158, A20163), glabra (A20158, A20163), abnormal flower (direct input, A20158, A20163), abnormal leaf (A20158, A20163), dark green leaf (A20158, A20163), abnormal shaped silique (A20158, A20163), long hypocotyl (direct input)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project sterile or low fertility (A20862-142)
bushy (A20793-1004)
bushy (A20740-6)
bushy (A20793-1003)
narrow leaf, bushy (A20770-154)
tall height (A20863-180)
serrated leaf, bushy (A20756-71)
narrow leaf, bushy (A20771-175)
abnormal stem, abnormal leaf, abnormal flower (A20811-340)
narrow leaf, bushy (A20786-194)
rough surface leaf (A20863-170)
Phenotype in ornamental plants
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