fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G03710 AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)

>AT2G03710.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 18, 99, 156, 250, 288, 345, 369, 605
ApoI Pu|AATTPy 166
BamHI G|GATCC 237
BanII GPuGCPy|C 606
BclI T|GATCA 444
BfaI C|TAG 180, 335
BglII A|GATCT 418, 498
BsaBI GATNN|NNATC 242, 272
BsaJI C|CNNGG 150, 425, 759
BsiHKAI G[AT]GC[AT]|C 606
BslI CCNNNNN|NNGG 430, 660
Bsp1286I G[GAT]GC[CAT]|C 606
BsrDI GCAATGNN| 667
BssKI |CCNGG 759
BstF5I GGATGNN| 361, 764
BstNI CC|[AT]GG 759
BstYI Pu|GATCPy 237, 308, 418, 498
BtgI C|CPuPyGG 150
Cac8I GCN|NGC 155
DdeI C|TNAG 121, 405, 466, 501
DpnI GA-CH3|TC 40, 236, 307, 417, 443, 497
DpnII |GATC 40, 236, 307, 417, 443, 497
EcoNI CCTNN|NNNAGG 660
EcoRI G|AATTC 166
Fnu4HI GC|NGC 172, 528, 561
HindIII A|AGCTT 289
HinfI G|ANTC 751
Hpy188I TCN|GA 351, 453, 772
HpyCH4III ACN|GT 148, 198, 520
HpyCH4V TG|CA 61, 170, 226, 261, 397, 526, 562, 675, 706, 712, 724
MboI |GATC 40, 236, 307, 417, 443, 497
MseI T|TAA 291, 744
MslI CAPyNN|NNPuTG 224
MwoI GCNNNNN|NNGC 126
NlaIII CATG| 601
NlaIV GGN|NCC 237
NsiI ATGCA|T 398
PspGI |CC[AT]GG 759
PstI CTGCA|G 171, 563
SacI GAGCT|C 606
Sau3AI |GATC 40, 236, 307, 417, 443, 497
ScrFI CC|NGG 759
SfcI C|TPuPyAG 171, 563
SmlI C|TPyPuAG 85, 373
StyI C|C[AT][AT]GG 425
Taq��I T|CGA 381
TfiI G|A[AT]TC 751
TseI G|C[AT]GC 172, 528, 561
Tsp509I |AATT 165, 628
TspRI NNCA[CG]TGNN| 523


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>AT2G03710.1 length:777
ATGGGAAGAG GGAAAGTTGA GCTGAAGAGG ATAGAGAACA AGATCAATAG 
50
ACAAGTTACT TTTGCAAAGA GAAGAAATGG TTTGCTCAAG AAGGCTTATG 
100
AGCTTTCTGT CCTTTGTGAT GCTGAGATTG CTCTTCTCAT TTTCTCTAAC 
150
CGTGGCAAGC TCTACGAATT CTGCAGCAGC CCTAGTGGTA TGGCGAGGAC 
200
GGTTGATAAG TATAGAAAAC ATAGTTATGC AACAATGGAT CCAAATCAAT 
250
CAGCTAAAGA CTTGCAGGAT AAGTATCAAG ACTACTTGAA GCTTAAATCA 
300
AGAGTTGAGA TCCTTCAACA TTCACAAAGG CATTTGCTAG GTGAAGAGCT 
350
ATCCGAGATG GATGTGAATG AGCTTGAGCA TCTCGAACGC CAAGTAGATG 
400
CATCACTAAG ACAAATAAGA TCTACCAAGG CTCGGTCTAT GCTTGATCAA 
450
CTATCTGACC TCAAAACTAA GGAGGAAATG TTATTGGAAA CCAATAGAGA 
500
TCTTAGGAGA AAGTTGGAGG ACAGTGATGC AGCACTTACT CAATCGTTTT 
550
GGGGAAGTTC TGCTGCAGAA CAACAACAAC AACATCAACA ACAGCAACAA 
600
GGCATGAGCT CTTATCAATC AAACCCTCCA ATTCAGGAAG CAGGTTTCTT 
650
CAAGCCTCTA CAAGGCAATG TAGCATTGCA AATGAGCAGT CATTACAATC 
700
ACAATCCTGC AAATGCAACC AACTCTGCAA CAACATCACA GAATGTTAAT 
750
GGATTCTTCC CTGGATGGAT GGTCTGA
800

>AT2G03710.1 longest ORF length:258
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN 
50
RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS 
100
RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ 
150
LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ 
200
GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN 
250
GFFPGWMV
300