fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G03710 (AGL3, SEP4)

Alias AGL3, SEP4
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SEPALLATA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
TAIR annotation This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. (.1.2.3)
Gene model
Gene model cDNA support
AT2G03710.1 13
AT2G03710.2 12
AT2G03710.3 10
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10076: other biological processes ->maintenance of floral meristem identity
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48440: developmental processes ->carpel development
(P) 48441: developmental processes ->petal development
(P) 48442: developmental processes ->sepal development
(P) 48443: developmental processes ->stamen development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 12 13
rice 1 6 7
sorghum 1 5 6
physcomitrella
Total 4 25 29
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
WGVCGSLSLSLCVCVC at 32/401 in sorghum Sb023523 (Type II)
EANQERLHLALDPSLH at 202/225 in sorghum Sb003019 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        abnormal flower (small or no sepal, long receptacle)

         abnormal flower (direct input), 
         abnormal sepal (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         too large leaf 
         (A20315-30)
         

         
         

         abnormal flower 
         (A20315-7)
         

         
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID29
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

         

         

          Comment