Locus |
Common name |
Short description |
AT2G03710 |
AGL3, SEP4 |
SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) |
>AT2G03710.2 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AluI
| AG|CT |
18, 99, 156, 250, 288, 345, 369, 605 |
ApoI
| Pu|AATTPy |
166 |
BamHI
| G|GATCC |
237 |
BanII
| GPuGCPy|C |
606 |
BclI
| T|GATCA |
444 |
BfaI
| C|TAG |
180, 335 |
BglII
| A|GATCT |
418, 498 |
BsaBI
| GATNN|NNATC |
242, 272 |
BsaJI
| C|CNNGG |
150, 425, 756 |
BsiHKAI
| G[AT]GC[AT]|C |
606 |
BslI
| CCNNNNN|NNGG |
430, 660 |
Bsp1286I
| G[GAT]GC[CAT]|C |
606 |
BsrDI
| GCAATGNN| |
667 |
BssKI
| |CCNGG |
756 |
BstF5I
| GGATGNN| |
361, 761 |
BstNI
| CC|[AT]GG |
756 |
BstYI
| Pu|GATCPy |
237, 308, 418, 498 |
BtgI
| C|CPuPyGG |
150 |
Cac8I
| GCN|NGC |
155 |
DdeI
| C|TNAG |
121, 405, 466, 501 |
DpnI
| GA-CH3|TC |
40, 236, 307, 417, 443, 497 |
DpnII
| |GATC |
40, 236, 307, 417, 443, 497 |
EcoNI
| CCTNN|NNNAGG |
660 |
EcoRI
| G|AATTC |
166 |
Fnu4HI
| GC|NGC |
172, 528, 561 |
HindIII
| A|AGCTT |
289 |
HinfI
| G|ANTC |
683, 748 |
Hpy188I
| TCN|GA |
351, 453, 769 |
HpyCH4III
| ACN|GT |
148, 198, 520 |
HpyCH4V
| TG|CA |
61, 170, 226, 261, 397, 526, 562, 675, 703, 709, 721 |
MboI
| |GATC |
40, 236, 307, 417, 443, 497 |
MseI
| T|TAA |
291, 741 |
MslI
| CAPyNN|NNPuTG |
224 |
MwoI
| GCNNNNN|NNGC |
126 |
N.BstNBI
| GAGTCNNNN|N |
688 |
NlaIII
| CATG| |
601 |
NlaIV
| GGN|NCC |
237 |
NsiI
| ATGCA|T |
398 |
PspGI
| |CC[AT]GG |
756 |
PstI
| CTGCA|G |
171, 563 |
SacI
| GAGCT|C |
606 |
Sau3AI
| |GATC |
40, 236, 307, 417, 443, 497 |
ScrFI
| CC|NGG |
756 |
SfcI
| C|TPuPyAG |
171, 563 |
SmlI
| C|TPyPuAG |
85, 373 |
StyI
| C|C[AT][AT]GG |
425 |
Taqƒ¿I
| T|CGA |
381 |
TfiI
| G|A[AT]TC |
748 |
TseI
| G|C[AT]GC |
172, 528, 561 |
Tsp509I
| |AATT |
165, 628 |
TspRI
| NNCA[CG]TGNN| |
523 |
Click here to view TAIR data
>AT2G03710.2 length:774
ATGGGAAGAG GGAAAGTTGA GCTGAAGAGG ATAGAGAACA AGATCAATAG | 50 |
ACAAGTTACT TTTGCAAAGA GAAGAAATGG TTTGCTCAAG AAGGCTTATG | 100 |
AGCTTTCTGT CCTTTGTGAT GCTGAGATTG CTCTTCTCAT TTTCTCTAAC | 150 |
CGTGGCAAGC TCTACGAATT CTGCAGCAGC CCTAGTGGTA TGGCGAGGAC | 200 |
GGTTGATAAG TATAGAAAAC ATAGTTATGC AACAATGGAT CCAAATCAAT | 250 |
CAGCTAAAGA CTTGCAGGAT AAGTATCAAG ACTACTTGAA GCTTAAATCA | 300 |
AGAGTTGAGA TCCTTCAACA TTCACAAAGG CATTTGCTAG GTGAAGAGCT | 350 |
ATCCGAGATG GATGTGAATG AGCTTGAGCA TCTCGAACGC CAAGTAGATG | 400 |
CATCACTAAG ACAAATAAGA TCTACCAAGG CTCGGTCTAT GCTTGATCAA | 450 |
CTATCTGACC TCAAAACTAA GGAGGAAATG TTATTGGAAA CCAATAGAGA | 500 |
TCTTAGGAGA AAGTTGGAGG ACAGTGATGC AGCACTTACT CAATCGTTTT | 550 |
GGGGAAGTTC TGCTGCAGAA CAACAACAAC AACATCAACA ACAGCAACAA | 600 |
GGCATGAGCT CTTATCAATC AAACCCTCCA ATTCAGGAAG CAGGTTTCTT | 650 |
CAAGCCTCTA CAAGGCAATG TAGCATTGCA AATGAGTCAT TACAATCACA | 700 |
ATCCTGCAAA TGCAACCAAC TCTGCAACAA CATCACAGAA TGTTAATGGA | 750 |
TTCTTCCCTG GATGGATGGT CTGA | 800 |
>AT2G03710.2 longest ORF length:257
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN | 50 |
RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS | 100 |
RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ | 150 |
LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ | 200 |
GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG | 250 |
FFPGWMV | 300 |
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