fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G03710 AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)

>AT2G03710.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AluI AG|CT 18, 99, 156, 250, 288, 345, 369, 605
ApoI Pu|AATTPy 166
BamHI G|GATCC 237
BanII GPuGCPy|C 606
BclI T|GATCA 444
BfaI C|TAG 180, 335
BglII A|GATCT 418, 498
BsaBI GATNN|NNATC 242, 272
BsaJI C|CNNGG 150, 425, 756
BsiHKAI G[AT]GC[AT]|C 606
BslI CCNNNNN|NNGG 430, 660
Bsp1286I G[GAT]GC[CAT]|C 606
BsrDI GCAATGNN| 667
BssKI |CCNGG 756
BstF5I GGATGNN| 361, 761
BstNI CC|[AT]GG 756
BstYI Pu|GATCPy 237, 308, 418, 498
BtgI C|CPuPyGG 150
Cac8I GCN|NGC 155
DdeI C|TNAG 121, 405, 466, 501
DpnI GA-CH3|TC 40, 236, 307, 417, 443, 497
DpnII |GATC 40, 236, 307, 417, 443, 497
EcoNI CCTNN|NNNAGG 660
EcoRI G|AATTC 166
Fnu4HI GC|NGC 172, 528, 561
HindIII A|AGCTT 289
HinfI G|ANTC 683, 748
Hpy188I TCN|GA 351, 453, 769
HpyCH4III ACN|GT 148, 198, 520
HpyCH4V TG|CA 61, 170, 226, 261, 397, 526, 562, 675, 703, 709, 721
MboI |GATC 40, 236, 307, 417, 443, 497
MseI T|TAA 291, 741
MslI CAPyNN|NNPuTG 224
MwoI GCNNNNN|NNGC 126
N.BstNBI GAGTCNNNN|N 688
NlaIII CATG| 601
NlaIV GGN|NCC 237
NsiI ATGCA|T 398
PspGI |CC[AT]GG 756
PstI CTGCA|G 171, 563
SacI GAGCT|C 606
Sau3AI |GATC 40, 236, 307, 417, 443, 497
ScrFI CC|NGG 756
SfcI C|TPuPyAG 171, 563
SmlI C|TPyPuAG 85, 373
StyI C|C[AT][AT]GG 425
Taqƒ¿I T|CGA 381
TfiI G|A[AT]TC 748
TseI G|C[AT]GC 172, 528, 561
Tsp509I |AATT 165, 628
TspRI NNCA[CG]TGNN| 523


Click here to view TAIR data

>AT2G03710.2 length:774
ATGGGAAGAG GGAAAGTTGA GCTGAAGAGG ATAGAGAACA AGATCAATAG 
50
ACAAGTTACT TTTGCAAAGA GAAGAAATGG TTTGCTCAAG AAGGCTTATG 
100
AGCTTTCTGT CCTTTGTGAT GCTGAGATTG CTCTTCTCAT TTTCTCTAAC 
150
CGTGGCAAGC TCTACGAATT CTGCAGCAGC CCTAGTGGTA TGGCGAGGAC 
200
GGTTGATAAG TATAGAAAAC ATAGTTATGC AACAATGGAT CCAAATCAAT 
250
CAGCTAAAGA CTTGCAGGAT AAGTATCAAG ACTACTTGAA GCTTAAATCA 
300
AGAGTTGAGA TCCTTCAACA TTCACAAAGG CATTTGCTAG GTGAAGAGCT 
350
ATCCGAGATG GATGTGAATG AGCTTGAGCA TCTCGAACGC CAAGTAGATG 
400
CATCACTAAG ACAAATAAGA TCTACCAAGG CTCGGTCTAT GCTTGATCAA 
450
CTATCTGACC TCAAAACTAA GGAGGAAATG TTATTGGAAA CCAATAGAGA 
500
TCTTAGGAGA AAGTTGGAGG ACAGTGATGC AGCACTTACT CAATCGTTTT 
550
GGGGAAGTTC TGCTGCAGAA CAACAACAAC AACATCAACA ACAGCAACAA 
600
GGCATGAGCT CTTATCAATC AAACCCTCCA ATTCAGGAAG CAGGTTTCTT 
650
CAAGCCTCTA CAAGGCAATG TAGCATTGCA AATGAGTCAT TACAATCACA 
700
ATCCTGCAAA TGCAACCAAC TCTGCAACAA CATCACAGAA TGTTAATGGA 
750
TTCTTCCCTG GATGGATGGT CTGA
800

>AT2G03710.2 longest ORF length:257
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN 
50
RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS 
100
RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ 
150
LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ 
200
GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG 
250
FFPGWMV
300