fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G03710 AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)

>AT2G03710.3 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 532
AluI AG|CT 18, 99, 156, 250, 288, 345, 369, 514
ApoI Pu|AATTPy 166
BamHI G|GATCC 237
BclI T|GATCA 444
BfaI C|TAG 180, 335
BglII A|GATCT 418, 498
BsaBI GATNN|NNATC 242, 272
BsaJI C|CNNGG 150, 425
BslI CCNNNNN|NNGG 430
BstF5I GGATGNN| 361
BstYI Pu|GATCPy 237, 308, 418, 498
BtgI C|CPuPyGG 150
Cac8I GCN|NGC 155
DdeI C|TNAG 121, 405, 466, 501
DpnI GA-CH3|TC 40, 236, 307, 417, 443, 497
DpnII |GATC 40, 236, 307, 417, 443, 497
EcoRI G|AATTC 166
Fnu4HI GC|NGC 172
HindIII A|AGCTT 289
HinfI G|ANTC 523
Hpy188I TCN|GA 351, 453, 520
HpyCH4III ACN|GT 148, 198
HpyCH4V TG|CA 61, 170, 226, 261, 397
MboI |GATC 40, 236, 307, 417, 443, 497
MseI T|TAA 291
MslI CAPyNN|NNPuTG 224
MwoI GCNNNNN|NNGC 126
NlaIV GGN|NCC 237
NsiI ATGCA|T 398
PstI CTGCA|G 171
Sau3AI |GATC 40, 236, 307, 417, 443, 497
SfcI C|TPuPyAG 171
SmlI C|TPyPuAG 85, 373
StyI C|C[AT][AT]GG 425
Taqƒ¿I T|CGA 381
TfiI G|A[AT]TC 523
TseI G|C[AT]GC 172
Tsp509I |AATT 165


Click here to view TAIR data

>AT2G03710.3 length:564
ATGGGAAGAG GGAAAGTTGA GCTGAAGAGG ATAGAGAACA AGATCAATAG 
50
ACAAGTTACT TTTGCAAAGA GAAGAAATGG TTTGCTCAAG AAGGCTTATG 
100
AGCTTTCTGT CCTTTGTGAT GCTGAGATTG CTCTTCTCAT TTTCTCTAAC 
150
CGTGGCAAGC TCTACGAATT CTGCAGCAGC CCTAGTGGTA TGGCGAGGAC 
200
GGTTGATAAG TATAGAAAAC ATAGTTATGC AACAATGGAT CCAAATCAAT 
250
CAGCTAAAGA CTTGCAGGAT AAGTATCAAG ACTACTTGAA GCTTAAATCA 
300
AGAGTTGAGA TCCTTCAACA TTCACAAAGG CATTTGCTAG GTGAAGAGCT 
350
ATCCGAGATG GATGTGAATG AGCTTGAGCA TCTCGAACGC CAAGTAGATG 
400
CATCACTAAG ACAAATAAGA TCTACCAAGG CTCGGTCTAT GCTTGATCAA 
450
CTATCTGACC TCAAAACTAA GGAGGAAATG TTATTGGAAA CCAATAGAGA 
500
TCTTAGGAGA AAGGTAGCTA TCGGAATCTT TTACCGCAAG AAACTGAAAC 
550
CATTTGTCAT TTGA
600

>AT2G03710.3 longest ORF length:187
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN 
50
RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS 
100
RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ 
150
LSDLKTKEEM LLETNRDLRR KVAIGIFYRK KLKPFVI
200