fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G17950 WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)

>AT2G17950.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BstAPI, BstBI, BstNI, BstUI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, TliI, TseI, Tth111I, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 5
AclI AA|CGTT 430
AflIII A|CPuPyGT 89
AluI AG|CT 482, 512, 861
AlwNI CAGNNN|CTG 521
ApoI Pu|AATTPy 498
BalI TGG|CCA 828
BanI G|GPyPuCC 811
BfaI C|TAG 698, 874
BsaAI PyAC|GTPu 90
BsaBI GATNN|NNATC 368, 740
BsaWI [AT]|CCGG[AT] 173
BsiWI C|GTACG 757
BslI CCNNNNN|NNGG 109, 693, 780
BspT107I(HgiCI) G|G[TC][AG]CC 811
BsrI ACTGGN| 257
BssSI C|TCGTG 278
BstEII G|GTNACC 177
BstF5I GGATGNN| 626
BstXI CCANNNNN|NTGG 573
BstYI Pu|GATCPy 194, 577
Cac8I GCN|NGC 511
DdeI C|TNAG 216, 515
DpnI GA-CH3|TC 188, 193, 202, 362, 576, 638, 788
DpnII |GATC 188, 193, 202, 362, 576, 638, 788
DraI TTT|AAA 501
DraIII CACNNN|GTG 111
EaeI Py|GGCCPu 828
Fnu4HI GC|NGC 5, 49, 354
HaeIII GG|CC 827
HhaI GCG|C 849
HinP1I G|CGC 849
HincII GTPy|PuAC 427
HinfI G|ANTC 298
HpaII C|CGG 72, 172
Hpy188I TCN|GA 191, 226, 287, 834, 869
Hpy99I CG[AT]CG| 121, 753
HpyCH4III ACN|GT 221, 394, 592, 781, 799
HpyCH4IV A|CGT 89, 246, 429, 612, 754, 865
HpyCH4V TG|CA 166, 208, 405, 508, 655, 777
MboI |GATC 188, 193, 202, 362, 576, 638, 788
MscI TGG|CCA 828
MseI T|TAA 432, 438, 500, 537
MslI CAPyNN|NNPuTG 395, 572
MspI C|CGG 72, 172
MwoI GCNNNNN|NNGC 11, 103
NlaIII CATG| 313, 403, 506, 556, 566, 634
NlaIV GGN|NCC 3, 260, 811
PmlI CAC|GTG 90
RsaI GT|AC 519, 756
Sau3AI |GATC 188, 193, 202, 362, 576, 638, 788
SmlI C|TPyPuAG 859
SwaI ATTT|AAAT 502
Taqƒ¿I T|CGA 672, 751
TfiI G|A[AT]TC 298
Tsp45I |GT[CG]AC 176
Tsp509I |AATT 419, 497, 602
TspRI NNCA[CG]TGNN| 208
XbaI T|CTAGA 699
XmnI GAANN|NNTTC 298


Click here to view TAIR data

>AT2G17950.1 length:879
ATGGAGCCGC CACAGCATCA GCATCATCAT CATCAAGCCG ACCAAGAAAG 
50
CGGCAACAAC AACAACAACA AGTCCGGCTC TGGTGGTTAC ACGTGTCGCC 
100
AGACCAGCAC GAGGTGGACA CCGACGACGG AGCAAATCAA AATCCTCAAA 
150
GAACTTTACT ACAACAATGC AATCCGGTCA CCAACAGCCG ATCAGATCCA 
200
GAAGATCACT GCAAGGCTGA GACAGTTCGG AAAGATTGAG GGCAAGAACG 
250
TCTTTTACTG GTTCCAGAAC CATAAGGCTC GTGAGCGTCA GAAGAAGAGA 
300
TTCAACGGAA CAAACATGAC CACACCATCT TCATCACCCA ACTCGGTTAT 
350
GATGGCGGCT AACGATCATT ATCATCCTCT ACTTCACCAT CATCACGGTG 
400
TTCCCATGCA GAGACCTGCT AATTCCGTCA ACGTTAAACT TAACCAAGAC 
450
CATCATCTCT ATCATCATAA CAAGCCATAT CCCAGCTTCA ATAACGGGAA 
500
TTTAAATCAT GCAAGCTCAG GTACTGAATG TGGTGTTGTT AATGCTTCTA 
550
ATGGCTACAT GAGTAGCCAT GTCTATGGAT CTATGGAACA AGACTGTTCT 
600
ATGAATTACA ACAACGTAGG TGGAGGATGG GCAAACATGG ATCATCATTA 
650
CTCATCTGCA CCTTACAACT TCTTCGATAG AGCAAAGCCT CTGTTTGGTC 
700
TAGAAGGTCA TCAAGAAGAA GAAGAATGTG GTGGCGATGC TTATCTGGAA 
750
CATCGACGTA CGCTTCCTCT CTTCCCTATG CACGGTGAAG ATCACATCAA 
800
CGGTGGTAGT GGTGCCATCT GGAAGTATGG CCAATCGGAA GTTCGCCCTT 
850
GCGCTTCTCT TGAGCTACGT CTGAACTAG
900

>AT2G17950.1 longest ORF length:292
MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK 
50
ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR 
100
FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD 
150
HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS 
200
MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE 
250
HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
300