Locus |
Common name |
Short description |
AT2G18550 |
HB-2, ATHB21 |
homeobox-2, homeobox protein 21 (.1) |
>AT2G18550.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AciI
| C|CGC |
322 |
AluI
| AG|CT |
224, 243 |
ApaLI
| G|TGCAC |
329 |
BclI
| T|GATCA |
21 |
BsaBI
| GATNN|NNATC |
26 |
BsiHKAI
| G[AT]GC[AT]|C |
329 |
BslI
| CCNNNNN|NNGG |
84, 561 |
BsmI
| GAATGCN| |
379 |
Bsp1286I
| G[GAT]GC[CAT]|C |
329 |
BsrDI
| GCAATGNN| |
169 |
BsrI
| ACTGGN| |
641 |
BstF5I
| GGATGNN| |
358, 645 |
BstYI
| Pu|GATCPy |
467 |
Cac8I
| GCN|NGC |
270, 477 |
DdeI
| C|TNAG |
277, 421 |
DpnI
| GA-CH3|TC |
20, 236, 263, 290, 466 |
DpnII
| |GATC |
20, 236, 263, 290, 466 |
HindIII
| A|AGCTT |
244 |
HinfI
| G|ANTC |
249, 349, 417 |
Hpy188I
| TCN|GA |
252, 276, 420, 577 |
Hpy99I
| CG[AT]CG| |
395 |
HpyCH4III
| ACN|GT |
332, 393, 508, 554, 586 |
HpyCH4V
| TG|CA |
328, 379, 478 |
MboI
| |GATC |
20, 236, 263, 290, 466 |
MfeI
| C|AATTG |
46 |
MseI
| T|TAA |
500 |
MwoI
| GCNNNNN|NNGC |
614 |
N.BstNBI
| GAGTCNNNN|N |
354 |
NlaIV
| GGN|NCC |
314 |
NsiI
| ATGCA|T |
380 |
RsaI
| GT|AC |
49, 74 |
Sau3AI
| |GATC |
20, 236, 263, 290, 466 |
SmlI
| C|TPyPuAG |
373 |
Taqƒ¿I
| T|CGA |
351 |
TfiI
| G|A[AT]TC |
249, 417 |
Tsp45I
| |GT[CG]AC |
528 |
Tsp509I
| |AATT |
45, 189, 651 |
Click here to view TAIR data
>AT2G18550.1 length:663
ATGAATAACC AGAATGTAGA TGATCATAAT CTTCTACTCA TTTCTCAATT | 50 |
GTACCCTAAT GTCTATACTC CATTAGTACC ACAACAAGGA GGAGAAGCAA | 100 |
AACCAACACG GCGGAGGAAA AGGAAGAGCA AGAGTGTTGT GGTGGCAGAG | 150 |
GAGGGTGAAA ACGAAGGCAA TGGGTGGTTT AGAAAGAGAA AATTGAGTGA | 200 |
TGAGCAAGTA AGAATGTTGG AGATTAGCTT TGAAGACGAT CATAAGCTTG | 250 |
AATCCGAGAG GAAAGATCGG CTTGCTTCTG AGTTAGGGCT TGATCCTCGT | 300 |
CAAGTCGCCG TCTGGTTCCA AAACCGCCGT GCACGGTGGA AGAACAAACG | 350 |
AGTCGAGGAT GAATACACTA AACTCAAGAA TGCATACGAA ACCACCGTCG | 400 |
TTGAGAAATG TCGTCTTGAT TCTGAGGTTA TTCACCTAAA GGAACAACTT | 450 |
TACGAGGCTG AAAGAGAGAT CCAACGGCTT GCAAAAAGAG TTGAAGGAAC | 500 |
TTTAAGTAAC AGTCCTATCT CATCCTCTGT GACCATTGAA GCCAATCATA | 550 |
CGACACCGTT TTTTGGAGAT TACGACATCG GATTTGACGG TGAGGCTGAC | 600 |
GAGAACTTGC TCTACTCGCC AGATTACATT GATGGATTAG ACTGGATGAG | 650 |
CCAATTTATG TAA | 700 |
>AT2G18550.1 longest ORF length:220
MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE | 50 |
EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR | 100 |
QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL | 150 |
YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD | 200 |
ENLLYSPDYI DGLDWMSQFM | 250 |
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