fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G18550 HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1)

>AT2G18550.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 322
AluI AG|CT 224, 243
ApaLI G|TGCAC 329
BclI T|GATCA 21
BsaBI GATNN|NNATC 26
BsiHKAI G[AT]GC[AT]|C 329
BslI CCNNNNN|NNGG 84, 561
BsmI GAATGCN| 379
Bsp1286I G[GAT]GC[CAT]|C 329
BsrDI GCAATGNN| 169
BsrI ACTGGN| 641
BstF5I GGATGNN| 358, 645
BstYI Pu|GATCPy 467
Cac8I GCN|NGC 270, 477
DdeI C|TNAG 277, 421
DpnI GA-CH3|TC 20, 236, 263, 290, 466
DpnII |GATC 20, 236, 263, 290, 466
HindIII A|AGCTT 244
HinfI G|ANTC 249, 349, 417
Hpy188I TCN|GA 252, 276, 420, 577
Hpy99I CG[AT]CG| 395
HpyCH4III ACN|GT 332, 393, 508, 554, 586
HpyCH4V TG|CA 328, 379, 478
MboI |GATC 20, 236, 263, 290, 466
MfeI C|AATTG 46
MseI T|TAA 500
MwoI GCNNNNN|NNGC 614
N.BstNBI GAGTCNNNN|N 354
NlaIV GGN|NCC 314
NsiI ATGCA|T 380
RsaI GT|AC 49, 74
Sau3AI |GATC 20, 236, 263, 290, 466
SmlI C|TPyPuAG 373
Taqƒ¿I T|CGA 351
TfiI G|A[AT]TC 249, 417
Tsp45I |GT[CG]AC 528
Tsp509I |AATT 45, 189, 651


Click here to view TAIR data

>AT2G18550.1 length:663
ATGAATAACC AGAATGTAGA TGATCATAAT CTTCTACTCA TTTCTCAATT 
50
GTACCCTAAT GTCTATACTC CATTAGTACC ACAACAAGGA GGAGAAGCAA 
100
AACCAACACG GCGGAGGAAA AGGAAGAGCA AGAGTGTTGT GGTGGCAGAG 
150
GAGGGTGAAA ACGAAGGCAA TGGGTGGTTT AGAAAGAGAA AATTGAGTGA 
200
TGAGCAAGTA AGAATGTTGG AGATTAGCTT TGAAGACGAT CATAAGCTTG 
250
AATCCGAGAG GAAAGATCGG CTTGCTTCTG AGTTAGGGCT TGATCCTCGT 
300
CAAGTCGCCG TCTGGTTCCA AAACCGCCGT GCACGGTGGA AGAACAAACG 
350
AGTCGAGGAT GAATACACTA AACTCAAGAA TGCATACGAA ACCACCGTCG 
400
TTGAGAAATG TCGTCTTGAT TCTGAGGTTA TTCACCTAAA GGAACAACTT 
450
TACGAGGCTG AAAGAGAGAT CCAACGGCTT GCAAAAAGAG TTGAAGGAAC 
500
TTTAAGTAAC AGTCCTATCT CATCCTCTGT GACCATTGAA GCCAATCATA 
550
CGACACCGTT TTTTGGAGAT TACGACATCG GATTTGACGG TGAGGCTGAC 
600
GAGAACTTGC TCTACTCGCC AGATTACATT GATGGATTAG ACTGGATGAG 
650
CCAATTTATG TAA
700

>AT2G18550.1 longest ORF length:220
MNNQNVDDHN LLLISQLYPN VYTPLVPQQG GEAKPTRRRK RKSKSVVVAE 
50
EGENEGNGWF RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR 
100
QVAVWFQNRR ARWKNKRVED EYTKLKNAYE TTVVEKCRLD SEVIHLKEQL 
150
YEAEREIQRL AKRVEGTLSN SPISSSVTIE ANHTTPFFGD YDIGFDGEAD 
200
ENLLYSPDYI DGLDWMSQFM 
250