fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G20350 Integrase-type DNA-binding superfamily protein (.1)

>AT2G20350.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BssHII, BstEII, BstXI, Bsu36I, BtrI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PspOMI, PvuII, RsrII, SacI, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SwaI, Tth111I, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 111, 3467
AccII(FnuDII) CG|CG 58, 90, 802, 2896, 3832, 3991
AciI C|CGC 464, 1390, 2273, 2582, 3831, 3990
AclI AA|CGTT 2735, 2909, 4492, 4710
AflII C|TTAAG 1826, 5761
AflIII A|CPuPyGT 825, 2657, 2687, 2771, 4074
AhdI GACNNN|NNGTC 176, 3862
AluI AG|CT 21, 30, 101, 135, 319, 340, 480, 530, 858, 1199, 2421, 2699, 2856, 3295, 4147, 4304, 4326, 5346, 5740, 5757, 5769, 5828, 5856, 5948, 6019, 6030
ApoI Pu|AATTPy 424, 600, 1083, 1234, 2203, 2249, 3050, 4005, 4690, 5210, 5679
AseI AT|TAAT 1968, 2101, 3441
AvaI C|PyCGPuG 5199, 5471, 5852
AvaII G|G[AT]CC 450, 3855, 5105
BalI TGG|CCA 988
BamHI G|GATCC 3635, 4459
BanI G|GPyPuCC 3829, 5070
BanII GPuGCPy|C 4370
BclI T|GATCA 2724, 4079
BfaI C|TAG 23, 327, 961, 1448, 2164, 2637, 2820, 2830, 3865, 3873, 4318, 4324, 4328, 5447
BglI GCCNNNN|NGGC 1000
BglII A|GATCT 5616
BsaAI PyAC|GTPu 197, 611, 826, 2686, 4639, 5096
BsaBI GATNN|NNATC 571
BsaJI C|CNNGG 1366, 3114, 3447, 3992, 5177
BsiEI CGPuPy|CG 2338, 5277
BsiHKAI G[AT]GC[AT]|C 4636
BslI CCNNNNN|NNGG 746, 5339
BsmI GAATGCN| 704, 2682, 4138
BsoBI C|PyCGPuG 5199, 5471, 5852
Bsp1286I G[GAT]GC[CAT]|C 4370, 4636
BspDI AT|CGAT 2340
BspHI T|CATGA 4941, 5776
BspT107I(HgiCI) G|G[TC][AG]CC 3829, 5070
BsrDI GCAATGNN| 596, 1980
BsrFI Pu|CCGGPy 4198
BsrGI T|GTACA 3219
BsrI ACTGGN| 488, 1224, 2187, 3174, 5607
BssKI |CCNGG 154, 442, 990, 3113, 5177, 5313
BssSI C|TCGTG 1396
BstAPI GCANNNN|NTGC 625
BstBI TT|CGAA 1237, 2588
BstF5I GGATGNN| 617, 1164, 5300
BstNI CC|[AT]GG 154, 442, 990, 5177, 5313
BstUI CG|CG 58, 90, 802, 2896, 3832, 3991
BstYI Pu|GATCPy 333, 948, 1183, 1257, 1370, 3635, 4459, 5616
BstZ17I GTA|TAC 3467
BtgI C|CPuPyGG 3992
BtsI GCAGTGNN| 1458, 6114
Cac8I GCN|NGC 57, 150, 2702, 4171, 4404, 5595, 5915
Cfr10I [AG]|CCGG[TC] 4198
ClaI AT|CGAT 2340
DdeI C|TNAG 587, 998, 1121, 1186, 1314, 2257, 2355, 3682, 3949, 4517, 4541, 4613, 5287, 5372, 5574, 5731, 5951
DpnI GA-CH3|TC 332, 472, 838, 947, 1146, 1182, 1256, 1369, 1876, 2224, 2337, 2649, 2723, 3634, 4028, 4064, 4078, 4151, 4458, 4558, 5276, 5352, 5375, 5615
DpnII |GATC 332, 472, 838, 947, 1146, 1182, 1256, 1369, 1876, 2224, 2337, 2649, 2723, 3634, 4028, 4064, 4078, 4151, 4458, 4558, 5276, 5352, 5375, 5615
DraI TTT|AAA 811, 2087, 2290, 3521, 3572, 5019, 5134
DraIII CACNNN|GTG 5116
EaeI Py|GGCCPu 988
EcoRI G|AATTC 1234, 5679
EcoRV GAT|ATC 2893
Fnu4HI GC|NGC 53, 482, 619, 3831, 4201, 4444, 4513, 4534, 5204
FspI TGC|GCA 1629
HaeII PuGCGC|Py 1640
HaeIII GG|CC 987, 992, 4172, 5173, 5179, 5330
HhaI GCG|C 91, 1628, 1639
HinP1I G|CGC 91, 1628, 1639
HincII GTPy|PuAC 227, 1141, 3043
HindIII A|AGCTT 531, 4305
HinfI G|ANTC 127, 241, 276, 306, 350, 688, 845, 1052, 1307, 2220, 2565, 2871, 3132, 3207, 3987, 5388, 5466
HpaI GTT|AAC 3043
HpaII C|CGG 3112, 4197
Hpy188I TCN|GA 46, 119, 419, 588, 1043, 1120, 1185, 1367, 2562, 4008, 4117, 4461, 4550, 4686, 5340, 5373, 5517
Hpy99I CG[AT]CG| 2176, 2865, 4115, 5151, 5338
HpyCH4III ACN|GT 386, 671, 1275, 1438, 1491, 1731, 1747, 2719, 3028, 3062, 3212, 3641, 3956, 4207, 4784, 5067, 5400
HpyCH4IV A|CGT 196, 610, 825, 1623, 1661, 2010, 2157, 2208, 2685, 2734, 2908, 2989, 4113, 4396, 4491, 4568, 4638, 4709, 4925, 5095, 5120
HpyCH4V TG|CA 54, 165, 257, 483, 617, 683, 1106, 1350, 2483, 2682, 2954, 3240, 3330, 3500, 3597, 3764, 3848, 4095, 4138, 4405, 5300, 5822
MboI |GATC 332, 472, 838, 947, 1146, 1182, 1256, 1369, 1876, 2224, 2337, 2649, 2723, 3634, 4028, 4064, 4078, 4151, 4458, 4558, 5276, 5352, 5375, 5615
MfeI C|AATTG 1921, 3547, 4829, 4966, 5437
MscI TGG|CCA 988
MseI T|TAA 70, 172, 389, 694, 772, 810, 820, 1086, 1169, 1560, 1664, 1789, 1825, 1963, 1967, 2086, 2100, 2182, 2234, 2289, 2731, 3024, 3042, 3072, 3165, 3197, 3257, 3440, 3481, 3520, 3571, 3653, 4239, 4622, 5018, 5029, 5133, 5403, 5495, 5523, 5721, 5760, 5908, 5938, 6003, 6062, 6090
MslI CAPyNN|NNPuTG 615, 2658, 2690, 5881
MspA1I C[AC]G|C[GT]G 3992, 4503
MspI C|CGG 3112, 4197
MwoI GCNNNNN|NNGC 29, 100, 625, 1000, 1637, 4146, 4210, 4510
N.BstNBI GAGTCNNNN|N 2570, 5393, 5471
NciI CC|[CG]GG 3113
NdeI CA|TATG 624, 1104, 3307, 3860
NlaIII CATG| 411, 698, 1480, 2023, 2107, 2366, 2656, 2770, 2781, 3007, 3850, 4073, 4081, 4140, 4340, 4373, 4403, 4940, 5775, 5792, 5875, 5914
NlaIV GGN|NCC 450, 717, 3312, 3635, 3829, 3855, 4459, 5070
NsiI ATGCA|T 1107, 4139
NspI PuCATG|Py 412, 2108, 2657, 2771, 4074, 4404, 5915
PacI TTAAT|TAA 1967
PaeR7I C|TCGAG 5199, 5852
PciI A|CATGT 2657, 2771, 4074
PmlI CAC|GTG 611, 826, 2686
PsiI TTA|TAA 2053, 4862
PspGI |CC[AT]GG 154, 442, 990, 5177, 5313
PstI CTGCA|G 684
PvuI CGAT|CG 2338, 5277
RsaI GT|AC 1618, 1859, 3184, 3218, 3876, 4321, 4415, 5603
SacII CCGC|GG 3992
Sau3AI |GATC 332, 472, 838, 947, 1146, 1182, 1256, 1369, 1876, 2224, 2337, 2649, 2723, 3634, 4028, 4064, 4078, 4151, 4458, 4558, 5276, 5352, 5375, 5615
Sau96I G|GNCC 450, 3855, 4173, 5105, 5174, 5180
ScaI AGT|ACT 4322
ScrFI CC|NGG 154, 442, 990, 3113, 5177, 5313
SfcI C|TPuPyAG 684, 5738
SmlI C|TPyPuAG 96, 1253, 1826, 2399, 5199, 5761, 5852
SnaBI TAC|GTA 197, 5096
SpeI A|CTAGT 962
SphI GCATG|C 4404, 5915
SspI AAT|ATT 2372, 3285, 4748, 5056
StuI AGG|CCT 993
StyI C|C[AT][AT]GG 3447
Taqƒ¿I T|CGA 730, 1236, 1266, 2174, 2222, 2339, 2587, 2866, 3298, 3740, 4133, 5198, 5274, 5350, 5851, 5945, 6048
TfiI G|A[AT]TC 241, 306, 350, 845, 1052, 1307, 2220
TliI C|TCGAG 5199, 5852
TseI G|C[AT]GC 53, 482, 619, 4201, 5204
Tsp45I |GT[CG]AC 1359, 1498, 3953, 4123, 4194, 4781, 4888, 5118
Tsp509I |AATT 162, 187, 204, 254, 287, 391, 423, 599, 1082, 1233, 1791, 1819, 1920, 1965, 2142, 2193, 2202, 2248, 2314, 2328, 2523, 2919, 3012, 3022, 3049, 3070, 3199, 3438, 3532, 3546, 3723, 3823, 3968, 4004, 4040, 4052, 4237, 4620, 4689, 4828, 4965, 5209, 5436, 5525, 5545, 5678, 5779, 5970, 6034, 6092
TspRI NNCA[CG]TGNN| 387, 488, 1458, 1492, 2261, 3002, 3174, 3213, 3240, 3953, 6114
XbaI T|CTAGA 2638, 2821, 2831
XcmI CCANNNNN|NNNNTGG 4439
XhoI C|TCGAG 5199, 5852
XmnI GAANN|NNTTC 34, 311, 1477, 1772, 2220, 4016


Click here to view TAIR data

>AT2G20350 genomic sequence (4000-4285,4437-4627,) length:6127
GAGGTGGAGT TATACAAGGG TCAGCTAGTG AAGCTGTTCT TGTTGTTCTG 
50
ATTGCTGCAC GCGACAAGGT TTTAAGAAGC GTTGGCAAAA ACGCGCTTGA 
100
GAAGCTCGTT GTCTACTCCT CTGACCAGAC TCATTCAGCT TTACAGAAGG 
150
CTTGCCAGgt aaaaattgca gacttaaagt caaagaaaaa ttggaatacg 
200
taactaattt tcttctggtt tgttttgttg acagATTGCT GGAATCCATC 
250
CAGAGAATTG CAGGGTGCTG ACAACAGACT CTTCTACAAA TTACGCTCTG 
300
CGTCCAGAAT CGCTTCAAGA AGCTGTTTCT AGGGATCTTG AAGCTGGATT 
350
GATTCCATTC TTCTTATGTG CTAATgtaag aactacactg ttaattactt 
400
accctcttga agcatgtcct ctgaaatttt tatttgttat ttccagGTTG 
450
GGACCACTTC TTCAACCGCA GTTGATCCAT TAGCTGCACT GGGGAAGATT 
500
GCTAATgtta gttatttcac atttccaaac aagcttcaca gagacttttg 
550
tggcatagaa acttatgata tttatcttgc tacatttctc agAGCAATGG 
600
AATTTGGTTT CACGTGGATG CAGCATATGC TGGAAGTGCC TGTATATGTC 
650
CAGAGTATCG GCAATACATT GACGGTGTAG AAACTGCAGA CTCTTTTAAC 
700
ATGAATGCTC ACAAATGGTT CCTCACTAAC TTCGATTGTT CCCTTCTTTG 
750
GGTAAAGgta tatatagccc attttaatct cttttctctt ttctttctct 
800
cttcgcgtat tttaaagagg attaacacgt gaaaaacagG ATCAAGATTC 
850
TCTTACATTA GCTCTTTCAA CAAATCCAGA GTTTCTCAAA AACAAGgtaa 
900
gaaagatttt gttctttaca gaaaaaaaaa aacaatcttt cttctttgga 
950
tctattagat tactagtctt cttatctaca ttttgtttgg ccagGCCTCT 
1000
CAGGCAAACT TGGTTGTTGA TTACAAAGAT TGGCAAATCC CTCTCGGACG 
1050
AAGATTCAGg ttttttgctt tcccagaaaa ataaatttta agttttgtaa 
1100
gaacatatgc atagataaca tctgagtatt gtgtttgttt gttgacagAT 
1150
CATTGAAACT ATGGATGGTT TTAAGGCTCT ATGGATCTGA GACCTTGAAG 
1200
AGCTATATAA GAAACCATAT CAAACTGGCT AAAGAATTCG AACAACTTGT 
1250
CTCTCAAGAT CCTAACTTCG AGgtaactgt aaaaatctca aatcattctg 
1300
gataaaagat tcttctaaga aagggtgaat atataagtga ttattcttgt 
1350
ttgcagATTG TCACACCTCG GATCTTTGCT CTTGTCTGTT TCCGCCTCGT 
1400
GCCTGTGAAA GACGAAGAAA AGAAGTGTAA TAACCGAAAC CGTGAACTCC 
1450
TAGACGCAGT GAACTCTTCA GGGAAACTCT TCATGTCGCA CACTgtaagt 
1500
gacttgtctt cctgcttctt gttcttgttc ttgttcttgg cttctctgcg 
1550
ggataatgtt gttaaatcaa tatatatgta ttggctttgc gtgggaaaca 
1600
gGCTTTATCG GGGAAAATCG TACTACGTTG CGCAATAGGA GCGCCATTGA 
1650
CGGAGGAGAA GCACGTTAAG GAGGCGTGGA AGATTATTCA GGAAGAAGCA 
1700
TCTTACTTGC TTCACAAGTA Aatatgataa aacagtaaaa gaataaaacg 
1750
gtttttgcca acaaaacgaa gcacttcggt ttggtttggt ttaatttgat 
1800
aatataataa taaaacagaa aattgcttaa gtaagactta tcaacttcgg 
1850
tttgatttcg gtacacttta gtaaggtgat ctttcttgtg tgtattttat 
1900
cctctatttt ttttttttac caattgtgtg tattttatct atttggtttg 
1950
ggtttatttt gtggttaatt aatgtaagca atgataataa aatgttctat 
2000
tttattgtta gacgtatttt ataccatgcg ataaaataaa agacaaatca 
2050
acttataagt tacacttttt tttttttggt aagggattta aagttacact 
2100
attaatcgca tgtttcattt ttttagggtg aatgtagccg tcaaattact 
2150
tattcaccac gttttctagt ggggttcgac ggattaactg gaataattta 
2200
gtaaatttta cgtttgaaat gattcgatcc atatattaaa cctacaaaaa 
2250
atttctcctc agtgaaaacc actaccgctt ggttgctttt ttaaaaaaaa 
2300
aaatcttgta taaacaattt cataggtaaa attgaagcga tcgatacaga 
2350
aatcgctaag aacaaagcat gaatattttg tcatctataa atgacttgct 
2400
caagaagacc aataccatac agagctttta tttgagacat aaagaaagtt 
2450
tatgatatat agaaacgaaa aggagatgat ggtatgcaac aaccactata 
2500
tatacaaaga acctcatcaa tagtaatttg tagggtttct tgttttttgt 
2550
cgtatcctcg tatccgagtc caatctgtgt attccgcttc gaaaactctt 
2600
tttgtgttgg tttcttattt agtcaatgat atagtattct agaaagtcaa 
2650
gatcacacat gtgaagtcaa gagcaaaaag gaatgcacgt gtgtgttttg 
2700
agctggcaac ttgacattga cggtgatcat tattaacgtt tactttcttt 
2750
accttttagt ataaaaagca acatgttatg ttcatgcttt cttatgcgaa 
2800
taatctggtt gtattttatt tctagagact tctagatttc cctcatcgtt 
2850
ttaccgaagc tctttcgtcg agactcttgt aggtgagaag ttgatatcgc 
2900
gttttatgaa cgttatatca aattatcgta ataggaatac tctgtttcgg 
2950
ttctctgcat ttttactttg ttttactcat tattctgttt acgttatcat 
3000
cagtgaaaca tgaaattgaa agcaattaac tgtctcattt tagttaacta 
3050
aatttgtctt gaactgtata taattaaatc aaagaaaaaa aatacaaaat 
3100
atgaaagtga tgaccgggga tattcaaagg gagactctca taacaacttg 
3150
gtatatgaat aaagacttaa agcactggaa tatgagtacc ttgtttcctt 
3200
aattattgac tcactgtttg tacagaaacc aaaaccagca ctgcaaatga 
3250
aatatatctt aacagaacag aaataacccc caaaaatatt tcaaaaagct 
3300
cgaaaacata tggttccatt ttgtatagcg ttgcacaatg taatgctaaa 
3350
tcaaaagagt agattagata tataagatag aaaaaaaaaa gagcaaaaag 
3400
gatagaacaa agtattatag atagaatgtc attgggcaaa attaatccaa 
3450
ggactgatac atacaagtat acaaccatcg tattaaccta tgaaaaagta 
3500
ttgcaaaata taaaatgatt tttaaaacaa tgaaattaca cctatccaat 
3550
tgttacgaat gaaactcaac ttttaaacac taaaaaaatg tgtatatttg 
3600
cagtccagat tacaaaataa accattatat aataggatcc aactgtattt 
3650
tgacttaaat aaggtagttg aaaatatctt gactaagaag tatatttggt 
3700
ttactcggtg tcaagactaa taataattag taagtagtgt atcgaataaa 
3750
tatagcaatc gcttttgcag aaaataaata tctactgaac agatgtatcg 
3800
ttctcaaagg aaaaaaacaa cactaattgg tgccgcgtat ctaaagattt 
3850
gcatgggacc atatgtctag tagtctagta ccatataaac ctttttttgc 
3900
ttactcgtca gtagtttctt ttgaaatctt cacaacactt tcaacacttc 
3950
tcagtgaccg tgagcaacga attattttca gttcaacgac tccgcggaaA 
4000
TGGAAAATTC AGAAAATGTT CCCTCTTACG ATCAAAACAT CAATTTCACT 
4050
CCTAATTTGA CGAGAGATCA AGAACATGTG ATCATGGTCT CTGCTTTGCA 
4100
ACAAGTAATA TCCAACGTCG GAGGTGACAC GAACTCGAAT GCATGGGAAG 
4150
CTGATCTTCC ACCTTTGAAC GCTGGCCCTT GTCCTCTTTG TAGTGTCACC 
4200
GGCTGCTACG GTTGCGTCTT CCCACGACAC GAGGCGATAA TTAAGAAGGA 
4250
GAAGAAGCAC AAAGGAGTGA GGAAAAAACC ATCAGgtaag ttctattcta 
4300
atacaagctt tgagtttttc tagtactagc tagttttagt tcatgtattt 
4350
tcatatatat ataagccacg agcccatgag gtaaactatg ttccaatacg 
4400
ttagcatgca gttgatgtac tttcataaac catcagGTAA ATGGGCGGCG 
4450
GAGATATGGG ATCCGAGTTT GAAAGTAAGG AGATGGCTTG GAACGTTTCC 
4500
AACAGCGGAG ATGGCGGCTA AGGCTTACAA CGATGCGGCG GCTGAGTTTG 
4550
TCGGAAGAAG ATCAGCAAGA CGTGGCACAA AGAACGGAGA GGAAGCATCT 
4600
ACCAAGAAGA CGACTGAGAA AAATTAAcgg agaaggagca cgtatagaaa 
4650
ggcaggaaga ggcatcttac ttgcttcaca agtaaatcag aatttttttg 
4700
aaaagtaaaa acgttatttt gtttggtaat aaaataaagt aaaacaaaat 
4750
attgctaacg caagacttat caagttcagt cgtgactgtg agtgtgtttt 
4800
tatgtatctt acttcatttt ttgtctttca attgtgtgtg tgtgtgtgtt 
4850
tttttttttt tttataatct atttggtttg ggtttattgt gaccaatgac 
4900
aagaaaagtc tatattttat agttagacgt attatatata tcatgagata 
4950
atatacaagc aaacacaatt gtaagcatat ataaaaatca atcaagttgt 
5000
tatgatattt atgataactt taaactttga ttaacaagaa aggtaatcca 
5050
atagtaatat ttgtcatacg gtgccgtttc actaataaat gggcttacgt 
5100
aatacggacc aacacaaagt gacgtggttt cattttaaag gtgttactta 
5150
tcgtcgccaa tgagatattg tcaaggccca ggcccatttg cttgtatcct 
5200
cgaggcagca aattcttgta ttccatttct ctcctcttct tcctctttct 
5250
ctctctcaca tctgtatttg ttgtctcgat cgtgtaactg agaacgaagg 
5300
ATGCAAGTAG TTTCCAGGAG ATTAGTTCAA CGGCCTCTCG TCGGAGGAGC 
5350
TTCGATCTAT TCATCTTCTT CTCTCAGATC GCTCTACGGA GTCTCTAATC 
5400
ACCgttaagt ttctgccatt gatttttttc ttatatcaat tgggatttct 
5450
aggttactta tgttatgagt ctcgggctaa tgagagattt gtgtttttaa 
5500
tgattttgtg tgtttcctct gattttaatt agTGAATGGG ACTGATAATT 
5550
GTCGCTATTC GTCTTCCCTC GCTACTAAGG GCGTGGGACA CCTCGCTCGC 
5600
AAGGGTACTG GTGGGAGATC TTCCGTAAGg tatgccattg ctctttttta 
5650
gggtttgttt cctttagaaa atgtttgaga attcatatag gaaggagaaa 
5700
cgatattggt ctctgttagg atttaagtag gcttagtcta tagctttgtt 
5750
tagttttgag cttaagagat agctttcatg aattactttc cttcatggag 
5800
aaatgtatcg tctctaatgg gtttgcagta gcttcagttt agtgaacttt 
5850
tctcgagagc tttctgttcc gtttgtcatg ggaatgagaa atgttcttgc 
5900
cgtgttatgt taaagcatgc ttattctgta tatcttttgt taagtttcga 
5950
gcttagagga tagatattgt aaattacttg cctttgcgga gaaatgtatc 
6000
atctttaagg ggtttttggt agctttagca cagctaattt gtagtttttt 
6050
cgagagtttt ctgttaagag gaaaagaagt atatgaaaat cttaatttct 
6100
cctttgcttt ggcagTGGCA TTGTAGC
6150