fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G21650 RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1)

>AT2G21650.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DpnI, DpnII, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HinfI, HpaI, HphI, Hpy188I, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, SacI, SacII, SalI, SapI, Sau3AI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 99
AluI AG|CT 124, 151, 294
AvaII G|G[AT]CC 101
BfaI C|TAG 74, 120, 173
BsaAI PyAC|GTPu 208
BsaWI [AT]|CCGG[AT] 99
BsiHKAI G[AT]GC[AT]|C 71
Bsp1286I G[GAT]GC[CAT]|C 71
BspEI T|CCGGA 99
BstF5I GGATGNN| 282
Cac8I GCN|NGC 69, 257
DdeI C|TNAG 154
Fnu4HI GC|NGC 260, 296
HpaII C|CGG 98
HpyCH4III ACN|GT 42, 103, 161
HpyCH4IV A|CGT 207
HpyCH4V TG|CA 297
MseI T|TAA 45
MspI C|CGG 98
MwoI GCNNNNN|NNGC 253
NlaIII CATG| 36, 289
PmlI CAC|GTG 208
PstI CTGCA|G 298
RsrII CG|G[AT]CCG 102
Sau96I G|GNCC 101
SfcI C|TPuPyAG 236, 298
Taqƒ¿I T|CGA 186, 195
TseI G|C[AT]GC 260, 296
Tsp45I |GT[CG]AC 181, 205


Click here to view TAIR data

>AT2G21650.1 length:306
ATGGCATCAG GCTCAATGTC TTCTTATGGC TCTGGCTCAT GGACTGTTAA 
50
GCAGAACAAA GCCTTTGAGC GTGCTCTAGC AGTCTATGAC CAAGACACTC 
100
CGGACCGTTG GCACAATGTT GCTAGAGCTG TTGGTGGTAA AACACCAGAA 
150
GAAGCTAAGA GACAGTATGA CCTTCTAGTT CGTGACATCG AAAGCATCGA 
200
GAATGGTCAC GTGCCATTCC CTGACTACAA GACTACTACA GGAAACAGCA 
250
ACAGAGGCAG GCTGCGTGAT GAGGAAAAGA GGATGAGAAG CATGAAGCTG 
300
CAGTGA
350

>AT2G21650.1 longest ORF length:101
MASGSMSSYG SGSWTVKQNK AFERALAVYD QDTPDRWHNV ARAVGGKTPE 
50
EAKRQYDLLV RDIESIENGH VPFPDYKTTT GNSNRGRLRD EEKRMRSMKL 
100
Q
150