fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G21650 (RSM1, ATRL2, MEE3)

Alias RSM1, ATRL2, MEE3
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDB
DATF
TAIR short description RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1)
TAIR annotation RSM1 is a member of a small sub-family of single MYB transcription factors. Analysis of overexpressin lines indicate its involvement during early morphogenesis. (.1)
Gene model
Gene model cDNA support
AT2G21650.1 21
Entry clone (w/o stop) RE_1367
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10114: response to abiotic or biotic stimulus ->response to red light
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9793: developmental processes ->embryo development ending in seed dormancy
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 10 12
soybean 1 2 18 21
rice 1 1 3 5
sorghum 1 5 6
physcomitrella
Total 3 5 36 44
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EKRLRNLNLNLQ at 91/97 in soybean Gm006862 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         slow growth (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         too large leaf 
         (A20737-162)
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID256
           Gentiana
           rolCpro:AtCDS-SRDX
           2007-06-14
            
           No phenotype 
            
          

          

           ID261
           Eustoma
           35S:AtCDS-SRDX
           2007-06-20
            
            
            
          

          

           ID548
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 11 lines 
           mono-tone pale violet corolla, wide ventral petals, bended dorsal petals 
[Publication link]		
           
          

         

         

          Comment